Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 1.6e-45 185.7 90 100.0
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 3.9e-15 84.7 77 53.2
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 6.6e-15 84.0 77 54.5
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 6.6e-15 84.0 77 54.5
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 1.9e-14 82.4 77 54.5
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 1.9e-14 82.4 77 50.6
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 2.5e-14 82.0 78 53.8
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 2.5e-14 82.0 77 54.5
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 4.3e-14 81.3 77 54.5
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.2e-13 79.7 77 54.5
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 1.2e-13 79.7 77 49.4
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 1.2e-13 79.7 77 49.4
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 1.6e-13 79.3 77 48.1
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 3.6e-13 78.2 77 48.1
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 6.2e-13 77.4 77 48.1
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 8.1e-13 77.0 88 42.0
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.4e-12 76.3 88 44.3
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 1.4e-12 76.3 77 51.9
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 1.8e-12 75.9 83 45.8
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 2.4e-12 75.5 77 45.5
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 3.1e-12 75.1 86 45.3
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 4.0e-12 74.7 88 43.2
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 4.0e-12 74.7 88 43.2
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 4.0e-12 74.7 88 43.2
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 4.0e-12 74.7 77 46.8
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 6.9e-12 73.9 84 44.0
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.2e-11 73.2 77 48.1
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 1.2e-11 73.2 77 45.5
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 1.2e-11 73.2 88 43.2
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.0e-11 72.4 73 50.7
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.0e-11 72.4 77 48.1
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 2.0e-11 72.4 77 46.8
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.6e-11 72.0 77 46.8
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 3.4e-11 71.6 77 46.8
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 4.4e-11 71.2 77 46.8
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 4.4e-11 71.2 77 46.8
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 4.4e-11 71.2 88 40.9
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 5.8e-11 70.9 88 39.8
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 5.8e-11 70.9 77 46.8
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 5.8e-11 70.9 77 46.8
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 7.6e-11 70.5 77 48.1
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 9.9e-11 70.1 71 47.9
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 1.3e-10 69.7 72 48.6
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 1.3e-10 69.7 73 45.2
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 1.7e-10 69.3 40 70.0
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 1.7e-10 69.3 77 45.5
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 1.7e-10 69.3 40 70.0
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.7e-10 69.3 71 47.9
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 2.9e-10 68.6 77 46.8
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 2.9e-10 68.6 71 46.5
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.8e-10 68.2 71 46.5
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 3.8e-10 68.2 84 39.3
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 3.8e-10 68.2 81 43.2
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 3.8e-10 68.2 88 38.6
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 4.9e-10 67.8 40 67.5
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 4.9e-10 67.8 40 70.0
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 4.9e-10 67.8 40 70.0
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 4.9e-10 67.8 40 70.0
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 4.9e-10 67.8 40 70.0
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 4.9e-10 67.8 40 70.0
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 4.9e-10 67.8 40 70.0
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 4.9e-10 67.8 88 40.9
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 4.9e-10 67.8 71 46.5
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 4.9e-10 67.8 71 46.5
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 6.4e-10 67.4 84 39.3
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 6.4e-10 67.4 40 67.5
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 6.4e-10 67.4 77 48.1
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 6.4e-10 67.4 71 49.3
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 6.4e-10 67.4 71 49.3
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 6.4e-10 67.4 66 48.5
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 8.4e-10 67.0 79 41.8
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 1.1e-09 66.6 72 51.4
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 1.1e-09 66.6 73 43.8
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 1.4e-09 66.2 71 45.1
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 1.9e-09 65.9 40 65.0
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 1.9e-09 65.9 89 39.3
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 2.4e-09 65.5 88 40.9
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 3.2e-09 65.1 77 42.9
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 4.2e-09 64.7 71 46.5
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 4.2e-09 64.7 77 44.2
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 5.4e-09 64.3 73 45.2
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 7.1e-09 63.9 76 44.7
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 9.3e-09 63.5 66 47.0
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 9.3e-09 63.5 59 50.8
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.2e-08 63.2 71 45.1
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 2.1e-08 62.4 69 44.9
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 2.7e-08 62.0 73 45.2
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 3.5e-08 61.6 73 43.8
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 4.6e-08 61.2 68 44.1
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 6.0e-08 60.8 75 45.3
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 6.0e-08 60.8 80 43.8
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 7.8e-08 60.5 83 38.6
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 1.0e-07 60.1 42 59.5
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 1.0e-07 60.1 88 40.9
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 1.0e-07 60.1 80 42.5
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.3e-07 59.7 73 43.8
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 1.3e-07 59.7 71 45.1
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 1.3e-07 59.7 43 62.8
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 1.3e-07 59.7 43 62.8
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 1.7e-07 59.3 32 71.9
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 2.3e-07 58.9 74 44.6
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 2.3e-07 58.9 63 42.9
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 2.3e-07 58.9 71 43.7
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 2.3e-07 58.9 71 43.7
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 3.0e-07 58.5 46 50.0
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 3.0e-07 58.5 48 56.2
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 3.9e-07 58.2 32 75.0
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 5.1e-07 57.8 42 57.1
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 5.1e-07 57.8 71 43.7
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 5.1e-07 57.8 42 61.9
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 1.1e-06 56.6 38 65.8
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.5e-06 56.2 42 57.1
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 3.3e-06 55.1 75 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 5.6e-06 54.3 70 41.4
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 7.3e-06 53.9 77 37.7


User provided reference genes

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