Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00997 Sapria himalayana HOM05D002920 ORTHO05D003118 0.0e+00 1432.2 721 100.0
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 4.4e-202 708.8 703 54.2
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 2.4e-200 703.0 706 53.4
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 2.0e-199 699.9 704 52.7
Cpa.g.sc21.37 Carica papaya HOM05D002920 ORTHO05D003118 2.7e-199 699.5 707 52.1
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 3.5e-199 699.1 703 53.8
Haze_22482 Corylus avellana HOM05D002920 ORTHO05D003118 3.9e-198 695.7 703 53.6
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 1.1e-197 694.1 707 53.0
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 1.9e-197 693.3 707 53.0
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 5.6e-197 691.8 706 52.4
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 7.3e-197 691.4 713 51.5
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 9.5e-197 691.0 708 52.7
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 1.8e-195 686.8 712 50.6
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 1.5e-194 683.7 701 53.1
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 2.0e-194 683.3 705 50.6
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 2.6e-194 682.9 717 52.0
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 2.6e-194 682.9 706 51.4
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 3.4e-194 682.6 708 51.7
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 5.8e-194 681.8 706 51.4
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 3.7e-193 679.1 703 51.8
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 8.3e-193 677.9 706 51.3
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 5.4e-192 675.2 700 51.3
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 4.6e-191 672.2 704 51.1
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 7.8e-191 671.4 701 51.6
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 1.1e-189 667.5 711 50.5
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 3.3e-189 666.0 704 51.0
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 5.6e-189 665.2 701 50.8
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 5.6e-189 665.2 704 50.6
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 7.3e-189 664.8 700 50.9
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 9.5e-189 664.5 703 50.8
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 1.2e-188 664.1 709 50.5
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 2.1e-188 663.3 704 51.1
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 4.7e-188 662.1 705 50.4
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 4.7e-188 662.1 702 50.9
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 1.1e-187 661.0 704 50.6
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 2.3e-187 659.8 701 50.8
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 1.2e-186 657.5 702 50.7
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 7.5e-186 654.8 704 50.1
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 1.3e-185 654.1 705 50.5
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 1.7e-185 653.7 704 49.4
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 1.7e-185 653.7 703 49.5
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 2.2e-185 653.3 704 50.4
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 4.9e-185 652.1 708 49.2
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 8.3e-185 651.4 705 50.2
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 1.4e-184 650.6 710 49.3
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 7.1e-184 648.3 706 49.3
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 1.6e-183 647.1 710 49.0
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 2.1e-183 646.7 705 50.5
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 2.7e-183 646.4 705 49.1
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 7.8e-183 644.8 709 48.9
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 1.3e-182 644.0 708 48.6
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 1.7e-182 643.7 705 49.5
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 3.9e-182 642.5 710 49.4
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 6.6e-182 641.7 728 47.8
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 3.3e-181 639.4 707 49.9
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 3.3e-181 639.4 705 48.8
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 1.2e-180 637.5 705 49.1
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 2.8e-180 636.3 704 49.3
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 6.2e-180 635.2 706 48.2
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 2.3e-179 633.3 720 47.5
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 1.2e-178 630.9 707 48.7
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 1.5e-178 630.6 707 47.8
AUR62019108 Chenopodium quinoa HOM05D002920 ORTHO05D003118 3.4e-178 629.4 707 48.7
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 5.8e-178 628.6 700 47.4
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 7.6e-178 628.2 705 48.5
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 9.9e-178 627.9 706 49.0
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 1.3e-177 627.5 709 48.1
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.9e-177 626.3 707 48.2
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 3.7e-177 625.9 706 48.0
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 3.2e-176 622.9 701 47.6
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 5.4e-176 622.1 702 48.1
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 7.1e-176 621.7 708 48.0
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 1.2e-175 620.9 707 47.7
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 2.7e-175 619.8 708 48.6
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 2.7e-175 619.8 701 48.4
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 3.5e-175 619.4 707 47.9
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 3.5e-175 619.4 706 47.9
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 7.8e-175 618.2 704 47.7
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 1.5e-173 614.0 702 48.6
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.5e-173 614.0 703 47.7
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.5e-173 614.0 714 46.9
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 1.5e-173 614.0 707 45.8
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 3.3e-173 612.8 703 47.8
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 5.6e-173 612.1 703 48.2
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 5.6e-173 612.1 714 46.8
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 9.6e-173 611.3 702 48.0
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.2e-172 610.9 713 46.7
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 1.2e-172 610.9 706 47.9
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 1.2e-172 610.9 718 48.1
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 1.6e-172 610.5 703 47.7
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 1.6e-172 610.5 703 47.7
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.6e-172 610.5 703 47.5
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.6e-172 610.5 701 47.6
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 2.1e-172 610.1 703 47.7
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 2.1e-172 610.1 703 47.9
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 2.1e-172 610.1 703 47.9
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 4.7e-172 609.0 702 48.0
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 4.7e-172 609.0 706 47.7
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 6.2e-172 608.6 703 48.1
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 6.2e-172 608.6 703 48.1
Ca_05461_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 1.8e-171 607.1 708 47.6
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 5.2e-171 605.5 708 45.8
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 1.5e-170 604.0 705 47.2
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 2.0e-170 603.6 708 47.0
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 2.0e-170 603.6 706 47.6
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 3.4e-170 602.8 709 47.0
Psat2g064080 Pisum sativum HOM05D002920 ORTHO05D003118 6.4e-169 598.6 706 46.7
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 8.4e-169 598.2 701 47.2
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 1.1e-168 597.8 704 45.9
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 1.1e-168 597.8 709 47.1
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 2.4e-168 596.7 705 45.4
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 5.4e-168 595.5 704 45.7
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 6.0e-167 592.0 709 46.5
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 3.6e-164 582.8 710 47.2
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 6.2e-164 582.0 708 46.2
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 1.1e-163 581.3 708 44.2
DCAR_024958 Daucus carota HOM05D002920 ORTHO05D003118 1.8e-163 580.5 720 46.1
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 9.9e-162 574.7 705 45.1
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 1.7e-161 573.9 701 43.4
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 4.2e-160 569.3 709 44.1
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 6.2e-156 555.4 698 43.1
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 1.4e-155 554.3 709 43.9
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 1.4e-155 554.3 709 43.9
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 3.1e-155 553.1 700 43.7
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 6.9e-155 552.0 705 43.7
C01p35910 Brassica napus HOM05D002920 ORTHO05D003118 2.6e-154 550.1 664 46.4
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 1.1e-152 544.7 716 42.6
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 2.7e-151 540.0 706 42.1
Lsat_1_v5_gn_7_70960 Lactuca sativa HOM05D002920 ORTHO05D003118 1.1e-149 534.6 714 42.2
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.6e-148 530.8 712 42.0
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 2.1e-148 530.4 697 41.2
HPP92_024863 Vanilla planifolia HOM05D002920 ORTHO05D003118 3.7e-148 529.6 712 41.0
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 4.8e-148 529.3 705 41.4
Lsat_1_v5_gn_9_80701 Lactuca sativa HOM05D002920 ORTHO05D003118 1.0e-145 521.5 671 42.6
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 1.3e-145 521.2 705 41.8
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 8.4e-145 518.5 701 41.9
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.4e-144 517.7 705 42.6
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 5.5e-144 515.8 705 41.3
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 1.2e-143 514.6 707 41.6
Hund17268 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.7e-143 513.5 729 39.9
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 1.0e-142 511.5 706 40.7
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 2.3e-142 510.4 701 41.1
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 2.1e-135 487.3 710 39.0
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 8.2e-132 475.3 722 39.6
SEGI_17287 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 2.7e-127 460.3 720 36.2
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 2.2e-124 450.7 701 37.9
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 2.8e-124 450.3 707 39.3
vmacro04641 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 6.9e-123 445.7 443 52.1
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 1.6e-114 417.9 378 57.7
A09p18500 Brassica napus HOM05D002920 ORTHO05D003118 3.8e-105 386.7 495 44.4
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 1.1e-88 332.0 698 35.2
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 9.5e-88 328.9 673 35.5
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 1.6e-82 311.6 719 30.5
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 5.0e-81 306.6 476 41.2
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 6.8e-78 296.2 706 30.6
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 3.2e-67 260.8 514 34.2
CAN.G375.36 Capsicum annuum HOM05D002920 ORTHO05D003118 1.1e-64 252.3 343 42.3
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 1.3e-60 238.8 735 27.2
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 4.1e-59 233.8 711 27.1
Atru.chr13.988 Acer truncatum HOM05D002920 ORTHO05D003118 7.3e-56 223.0 264 47.7
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.2e-53 215.7 219 51.1
MD08G1202400 Malus domestica HOM05D002920 ORTHO05D003118 1.2e-50 205.7 261 44.4
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 6.0e-50 203.4 487 32.6
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 2.9e-44 184.5 682 28.4
CBR_g40338 Chara braunii HOM05D002920 ORTHO05D003118 3.8e-44 184.1 808 25.1
MD08G1202300 Malus domestica HOM05D002531 ORTHO05D003118 2.3e-33 148.3 210 42.9
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 4.8e-31 140.6 487 28.1


User provided reference genes

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