Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 4.8e-38 160.6 77 100.0
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.4e-29 132.5 73 87.7
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.1e-22 108.6 73 72.6
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 4.8e-22 107.5 73 69.9
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 6.3e-22 107.1 73 71.2
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 6.3e-22 107.1 73 71.2
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.2e-20 102.8 73 68.5
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 2.0e-20 102.1 73 65.8
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 3.4e-20 101.3 73 67.1
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 3.4e-20 101.3 73 64.4
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 4.5e-20 100.9 73 65.8
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 7.6e-20 100.1 73 67.1
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 7.6e-20 100.1 73 64.4
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.0e-19 99.8 73 63.0
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.3e-19 99.4 73 65.8
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.2e-19 98.6 73 64.4
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 2.2e-19 98.6 73 63.0
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.2e-19 98.6 73 64.4
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 2.9e-19 98.2 73 60.3
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 5.0e-19 97.4 73 63.0
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 6.5e-19 97.1 73 63.0
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 6.5e-19 97.1 73 63.0
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 6.5e-19 97.1 73 64.4
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 8.5e-19 96.7 73 58.9
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 8.5e-19 96.7 73 64.4
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 63.0
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 63.0
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 64.4
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 61.6
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 63.0
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 60.3
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 64.4
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 61.6
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 63.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 63.0
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.1e-18 96.3 73 63.0
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.4e-18 95.9 73 61.6
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.9e-18 95.5 73 64.4
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.9e-18 95.5 73 63.0
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.9e-18 95.5 73 63.0
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.9e-18 95.5 73 60.3
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.9e-18 95.5 73 60.3
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 2.5e-18 95.1 73 60.3
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.5e-18 95.1 73 60.3
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.5e-18 95.1 73 60.3
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.5e-18 95.1 73 60.3
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 2.5e-18 95.1 73 64.4
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 2.5e-18 95.1 73 63.0
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 3.2e-18 94.7 73 61.6
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 3.2e-18 94.7 73 58.9
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.2e-18 94.7 73 58.9
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 4.2e-18 94.4 73 57.5
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 4.2e-18 94.4 73 63.0
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 4.2e-18 94.4 73 63.0
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 4.2e-18 94.4 73 61.6
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 4.2e-18 94.4 73 61.6
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 4.2e-18 94.4 73 57.5
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 5.5e-18 94.0 73 61.6
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 7.2e-18 93.6 73 61.6
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 7.2e-18 93.6 73 58.9
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 7.2e-18 93.6 73 60.3
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 7.2e-18 93.6 73 60.3
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 9.3e-18 93.2 73 61.6
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 9.3e-18 93.2 73 58.9
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 9.3e-18 93.2 73 60.3
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 9.3e-18 93.2 73 60.3
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 9.3e-18 93.2 73 58.9
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 9.3e-18 93.2 73 58.9
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 9.3e-18 93.2 73 60.3
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.2e-17 92.8 73 60.3
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.2e-17 92.8 73 58.9
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.2e-17 92.8 73 57.5
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.2e-17 92.8 73 61.6
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.6e-17 92.4 73 61.6
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 2.1e-17 92.0 73 58.9
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 2.7e-17 91.7 73 61.6
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.6e-17 91.3 73 58.9
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.6e-17 91.3 73 58.9
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 4.6e-17 90.9 73 58.9
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 4.6e-17 90.9 73 57.5
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 4.6e-17 90.9 73 57.5
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 4.6e-17 90.9 73 57.5
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 4.6e-17 90.9 73 57.5
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 4.6e-17 90.9 73 57.5
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 4.6e-17 90.9 73 57.5
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 4.6e-17 90.9 73 60.3
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 4.6e-17 90.9 61 75.4
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 6.1e-17 90.5 73 57.5
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 6.1e-17 90.5 73 61.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 6.1e-17 90.5 73 54.8
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 6.1e-17 90.5 73 58.9
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 7.9e-17 90.1 73 54.8
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 7.9e-17 90.1 73 54.8
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.0e-16 89.7 73 57.5
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.0e-16 89.7 73 57.5
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 1.0e-16 89.7 73 58.9
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.0e-16 89.7 73 56.2
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.3e-16 89.4 73 57.5
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.3e-16 89.4 73 57.5
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.8e-16 89.0 73 57.5
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.8e-16 89.0 73 61.6
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.8e-16 89.0 73 60.3
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 3.0e-16 88.2 73 56.2
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 3.0e-16 88.2 73 57.5
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.0e-16 88.2 73 60.3
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 3.0e-16 88.2 73 57.5
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 3.9e-16 87.8 73 56.2
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 3.9e-16 87.8 73 58.9
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 3.9e-16 87.8 73 56.2
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 5.1e-16 87.4 73 58.9
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 5.1e-16 87.4 73 57.5
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 5.1e-16 87.4 73 57.5
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 5.1e-16 87.4 73 57.5
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 5.1e-16 87.4 74 58.1
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.7e-16 87.0 73 58.9
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 8.7e-16 86.7 73 56.2
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 8.7e-16 86.7 73 58.9
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.1e-15 86.3 73 56.2
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.1e-15 86.3 73 58.9
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 1.1e-15 86.3 73 54.8
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.1e-15 86.3 73 54.8
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.5e-15 85.9 73 57.5
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.9e-15 85.5 73 54.8
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.3e-15 84.7 73 57.5
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.3e-15 84.7 73 57.5
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.6e-14 82.4 73 53.4
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.8e-14 80.9 66 60.6
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.1e-13 78.2 73 54.8
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 5.3e-13 77.4 73 47.9
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.5e-12 75.9 73 46.6
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 3.4e-12 74.7 73 49.3
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 4.5e-12 74.3 73 52.1
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 1.7e-11 72.4 73 49.3
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 6.5e-11 70.5 73 49.3
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 1.1e-10 69.7 73 49.3
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.9e-10 68.9 61 57.4
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.8e-08 62.4 75 45.3
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 5.7e-07 57.4 50 60.0
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 5.7e-07 57.4 50 60.0
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 5.7e-07 57.4 50 60.0


User provided reference genes

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