Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 3.4e-116 421.8 231 100.0
SHI15560 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-25 120.6 107 65.4
SHI33167 Sapria himalayana HOM05D000023 ORTHO05D000014 9.9e-23 111.3 108 72.2
SHI00754 Sapria himalayana HOM05D000603 ORTHO05D003510 8.4e-22 108.2 108 61.1
SHI34644 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-21 107.8 95 65.3
SHI38291 Sapria himalayana HOM05D000023 ORTHO05D000014 5.1e-19 99.0 106 55.7
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 1.4e-16 90.9 112 55.4
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 2.6e-15 86.7 85 72.9
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 1.6e-12 77.4 76 47.4
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.1e-12 77.0 82 46.3
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 1.3e-11 74.3 82 45.1
SHI05697 Sapria himalayana HOM05D000392 ORTHO05D001257 1.3e-11 74.3 118 44.1
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.8e-11 73.9 61 59.0
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 1.8e-11 73.9 86 45.3
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 1.8e-11 73.9 62 56.5
SHI27191 Sapria himalayana HOM05D000034 ORTHO05D000037 1.8e-11 73.9 79 55.7
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 2.3e-11 73.6 82 41.5
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 5.1e-11 72.4 71 49.3
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 5.1e-11 72.4 60 55.0
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 6.7e-11 72.0 79 46.8
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 8.7e-11 71.6 47 70.2
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 8.7e-11 71.6 60 56.7
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 1.1e-10 71.2 82 45.1
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.5e-10 70.9 65 52.3
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 1.5e-10 70.9 70 50.0
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 1.5e-10 70.9 82 46.3
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 1.5e-10 70.9 82 43.9
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 1.5e-10 70.9 60 55.0
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.9e-10 70.5 47 68.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.9e-10 70.5 67 52.2
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 2.5e-10 70.1 70 50.0
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 4.3e-10 69.3 71 47.9
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 4.3e-10 69.3 71 47.9
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 4.3e-10 69.3 41 70.7
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 5.7e-10 68.9 70 48.6
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 5.7e-10 68.9 84 44.0
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 7.4e-10 68.6 66 51.5
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 9.7e-10 68.2 70 47.1
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 9.7e-10 68.2 54 59.3
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.3e-09 67.8 67 47.8
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 1.3e-09 67.8 56 57.1
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 1.3e-09 67.8 66 45.5
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 1.6e-09 67.4 73 46.6
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 1.6e-09 67.4 47 66.0
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.6e-09 67.4 47 66.0
SHI11645 Sapria himalayana HOM05D000023 ORTHO05D030572 1.6e-09 67.4 64 57.8
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 2.2e-09 67.0 62 51.6
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 2.2e-09 67.0 66 50.0
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 2.8e-09 66.6 62 48.4
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 2.8e-09 66.6 54 57.4
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 3.7e-09 66.2 82 43.9
SHI23594 Sapria himalayana HOM05D000052 ORTHO05D018851 3.7e-09 66.2 92 44.6
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 4.8e-09 65.9 62 51.6
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 4.8e-09 65.9 54 57.4
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 6.3e-09 65.5 61 50.8
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 6.3e-09 65.5 82 41.5
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 6.3e-09 65.5 60 46.7
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 8.2e-09 65.1 65 50.8
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 8.2e-09 65.1 72 44.4
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 1.4e-08 64.3 54 55.6
SHI17078 Sapria himalayana HOM05D016227 ORTHO05D016154 2.4e-08 63.5 36 86.1
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 2.4e-08 63.5 41 68.3
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 3.1e-08 63.2 41 70.7
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 3.1e-08 63.2 78 43.6
SHI03836 Sapria himalayana HOM05D015319 ORTHO05D030572 3.1e-08 63.2 38 78.9
SHI20249 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-08 63.2 37 78.4
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 3.1e-08 63.2 73 41.1
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 4.1e-08 62.8 81 38.3
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 4.1e-08 62.8 81 38.3
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 4.1e-08 62.8 41 68.3
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 4.1e-08 62.8 60 48.3
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 4.1e-08 62.8 65 56.9
SHI21003 Sapria himalayana HOM05D000629 ORTHO05D016154 4.1e-08 62.8 38 78.9
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 5.3e-08 62.4 79 43.0
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 5.3e-08 62.4 66 45.5
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 6.9e-08 62.0 82 37.8
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 6.9e-08 62.0 41 65.9
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 9.0e-08 61.6 41 65.9
SHI06546 Sapria himalayana HOM05D015319 ORTHO05D030572 9.0e-08 61.6 37 81.1
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 1.2e-07 61.2 52 51.9
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.2e-07 61.2 52 51.9
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 1.2e-07 61.2 52 51.9
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 1.2e-07 61.2 41 68.3
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 1.5e-07 60.8 84 36.9
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 2.0e-07 60.5 60 46.7
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 2.0e-07 60.5 76 42.1
SHI28652 Sapria himalayana HOM05D000105 ORTHO05D000014 2.0e-07 60.5 100 45.0
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 2.6e-07 60.1 41 61.0
SHI37967 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-07 60.1 37 78.4
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 2.6e-07 60.1 41 63.4
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 3.4e-07 59.7 57 47.4
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 3.4e-07 59.7 41 63.4
SHI17526 Sapria himalayana HOM05D004343 ORTHO05D005695 3.4e-07 59.7 38 81.6
SHI35704 Sapria himalayana HOM05D000023 ORTHO05D000014 3.4e-07 59.7 37 81.1
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 4.5e-07 59.3 51 49.0
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 4.5e-07 59.3 40 65.0
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 7.7e-07 58.5 42 59.5
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 7.7e-07 58.5 41 63.4
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 7.7e-07 58.5 41 63.4
SHI07350 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-06 58.2 38 78.9
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.0e-06 58.2 58 48.3
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-06 57.8 92 39.1
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 1.3e-06 57.8 40 62.5
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 1.3e-06 57.8 40 62.5
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 2.2e-06 57.0 41 63.4
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 2.2e-06 57.0 41 65.9
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 2.2e-06 57.0 54 48.1
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 2.9e-06 56.6 41 58.5
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 2.9e-06 56.6 51 47.1
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 2.9e-06 56.6 71 39.4
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 3.8e-06 56.2 41 53.7
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 3.8e-06 56.2 42 57.1
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 3.8e-06 56.2 68 41.2
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 5.0e-06 55.8 60 43.3
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 5.0e-06 55.8 66 45.5
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 8.5e-06 55.1 41 61.0


User provided reference genes

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