Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 8.6e-85 317.0 167 100.0
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 1.6e-51 206.5 166 67.5
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 2.1e-51 206.1 159 69.8
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 6.2e-51 204.5 159 69.8
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 3.4e-49 198.7 159 68.6
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 4.5e-49 198.4 162 67.3
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 4.5e-49 198.4 162 66.0
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 1.3e-48 196.8 160 66.2
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 3.2e-47 192.2 167 62.9
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 5.5e-47 191.4 174 62.6
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 7.1e-47 191.0 167 62.9
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 1.6e-46 189.9 162 64.8
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 2.1e-46 189.5 167 63.5
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 2.7e-46 189.1 161 64.6
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 4.6e-46 188.3 167 61.7
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 6.0e-46 188.0 162 65.4
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 6.0e-46 188.0 163 63.8
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 7.9e-46 187.6 167 62.3
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 7.9e-46 187.6 168 60.7
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 1.3e-45 186.8 163 62.6
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.3e-45 186.8 163 66.9
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.8e-45 186.4 160 63.8
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 2.3e-45 186.0 167 60.5
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 3.0e-45 185.7 160 64.4
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 5.1e-45 184.9 167 61.1
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 6.7e-45 184.5 163 60.7
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 6.7e-45 184.5 163 60.7
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 6.7e-45 184.5 172 59.9
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 1.5e-44 183.3 167 61.7
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.5e-44 183.3 165 62.4
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 2.5e-44 182.6 167 61.1
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 7.4e-44 181.0 168 61.3
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 9.7e-44 180.6 167 61.1
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 9.7e-44 180.6 161 63.4
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 1.3e-43 180.3 161 63.4
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.3e-43 180.3 172 59.9
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 1.3e-43 180.3 172 59.9
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 1.6e-43 179.9 167 61.1
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 3.7e-43 178.7 162 62.3
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 3.7e-43 178.7 158 61.4
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 4.8e-43 178.3 161 60.9
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 6.3e-43 177.9 162 61.1
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 6.3e-43 177.9 160 62.5
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 6.3e-43 177.9 161 63.4
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 6.3e-43 177.9 161 60.2
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 8.2e-43 177.6 164 61.0
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 8.2e-43 177.6 161 61.5
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.1e-42 177.2 161 60.2
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 1.8e-42 176.4 159 62.9
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 1.8e-42 176.4 166 62.0
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 2.4e-42 176.0 172 59.3
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 3.1e-42 175.6 155 63.9
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 4.1e-42 175.3 162 60.5
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 5.3e-42 174.9 173 59.0
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 6.9e-42 174.5 175 56.0
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 6.9e-42 174.5 171 61.4
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 6.9e-42 174.5 171 59.6
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 6.9e-42 174.5 167 59.9
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 6.9e-42 174.5 156 62.8
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 1.2e-41 173.7 161 61.5
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.6e-41 172.6 166 59.0
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.6e-41 172.6 166 59.0
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 2.6e-41 172.6 162 60.5
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 2.6e-41 172.6 164 60.4
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 2.6e-41 172.6 164 58.5
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 2.6e-41 172.6 162 61.1
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 3.4e-41 172.2 173 60.1
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 4.5e-41 171.8 163 59.5
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 4.5e-41 171.8 140 63.6
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 5.9e-41 171.4 206 48.1
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 5.9e-41 171.4 162 60.5
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 7.6e-41 171.0 160 61.9
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.0e-40 170.6 173 59.5
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 1.3e-40 170.2 162 60.5
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 1.3e-40 170.2 162 60.5
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 1.3e-40 170.2 162 60.5
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.7e-40 169.9 123 69.9
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 2.9e-40 169.1 133 65.4
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 2.9e-40 169.1 123 69.9
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 3.8e-40 168.7 162 61.1
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 5.0e-40 168.3 173 56.1
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 6.5e-40 167.9 177 55.9
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 8.5e-40 167.5 117 71.8
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 1.1e-39 167.2 114 72.8
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 1.4e-39 166.8 125 68.8
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 2.5e-39 166.0 162 59.9
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 2.5e-39 166.0 163 60.1
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 2.5e-39 166.0 163 60.1
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 2.5e-39 166.0 162 59.9
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 4.2e-39 165.2 167 57.5
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 9.3e-39 164.1 164 58.5
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.2e-38 163.7 169 56.2
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 3.6e-38 162.2 162 58.6
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 3.6e-38 162.2 173 53.2
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 3.6e-38 162.2 167 58.1
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 7.9e-38 161.0 161 57.8
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.4e-37 160.2 198 48.5
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.8e-37 159.8 196 53.1
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.8e-37 159.8 167 53.9
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.0e-37 159.1 169 55.6
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 3.9e-37 158.7 170 55.9
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 5.1e-37 158.3 117 66.7
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 8.8e-37 157.5 151 58.3
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 8.8e-37 157.5 114 70.2
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 8.8e-37 157.5 145 59.3
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 7.4e-36 154.5 157 56.7
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 6.3e-35 151.4 155 54.8
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 1.1e-34 150.6 118 63.6
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 2.9e-32 142.5 161 52.8
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 3.8e-32 142.1 122 66.4
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 4.2e-31 138.7 149 53.0
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 5.5e-31 138.3 99 66.7
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 1.2e-30 137.1 149 53.7
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.6e-30 136.7 145 54.5
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 2.1e-30 136.3 105 65.7
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 7.9e-30 134.4 147 54.4
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 6.7e-29 131.3 98 67.3
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 2.0e-28 129.8 164 47.0
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 1.4e-26 123.6 116 54.3
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 3.1e-26 122.5 116 56.0
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 2.7e-22 109.4 102 54.9
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 4.7e-22 108.6 163 45.4
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 4.7e-22 108.6 83 65.1
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 6.1e-22 108.2 163 45.4
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 3.0e-13 79.3 58 72.4
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 8.5e-08 61.2 66 56.1


User provided reference genes

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