Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 2.2e-20 101.3 50 100.0
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 5.1e-17 90.1 50 88.0
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 5.1e-17 90.1 50 88.0
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 5.1e-17 90.1 50 88.0
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 5.1e-17 90.1 50 88.0
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 1.5e-16 88.6 50 86.0
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 1.5e-16 88.6 50 86.0
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.5e-16 88.6 50 86.0
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.5e-16 88.6 50 86.0
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.5e-16 88.6 50 86.0
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.5e-16 88.6 50 86.0
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.5e-16 88.6 50 86.0
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.5e-16 88.6 50 86.0
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 1.5e-16 88.6 50 86.0
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 2.5e-16 87.8 50 82.0
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 2.5e-16 87.8 50 82.0
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 3.3e-16 87.4 50 82.0
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 3.3e-16 87.4 50 84.0
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 4.3e-16 87.0 50 80.0
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 5.7e-16 86.7 50 82.0
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 5.7e-16 86.7 50 80.0
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 5.7e-16 86.7 50 80.0
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 5.7e-16 86.7 50 82.0
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 7.4e-16 86.3 50 84.0
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 7.4e-16 86.3 50 84.0
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 7.4e-16 86.3 50 84.0
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 7.4e-16 86.3 50 82.0
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 7.4e-16 86.3 50 82.0
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 7.4e-16 86.3 50 84.0
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 9.7e-16 85.9 50 80.0
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 9.7e-16 85.9 50 80.0
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 9.7e-16 85.9 50 80.0
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 1.3e-15 85.5 50 80.0
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.3e-15 85.5 50 86.0
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.3e-15 85.5 50 86.0
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 1.3e-15 85.5 50 86.0
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 1.3e-15 85.5 50 86.0
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 1.3e-15 85.5 50 86.0
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 2.2e-15 84.7 50 80.0
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 2.2e-15 84.7 50 82.0
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 2.8e-15 84.3 50 78.0
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 2.8e-15 84.3 50 78.0
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 2.8e-15 84.3 50 78.0
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 3.7e-15 84.0 49 77.6
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 84.0
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 84.0
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 84.0
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 4.8e-15 83.6 50 82.0
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 6.3e-15 83.2 50 80.0
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 8.2e-15 82.8 50 84.0
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 8.2e-15 82.8 50 84.0
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 8.2e-15 82.8 50 84.0
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 8.2e-15 82.8 50 84.0
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 8.2e-15 82.8 50 82.0
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 1.1e-14 82.4 50 80.0
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-14 82.4 50 80.0
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-14 82.4 50 80.0
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-14 82.4 50 80.0
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-14 82.4 50 80.0
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 1.1e-14 82.4 49 83.7
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 2.4e-14 81.3 49 83.7
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 2.4e-14 81.3 50 82.0
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 2.4e-14 81.3 50 82.0
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 2.4e-14 81.3 50 82.0
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 3.1e-14 80.9 50 78.0
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 3.1e-14 80.9 50 82.0
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 3.1e-14 80.9 49 81.6
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 3.1e-14 80.9 50 78.0
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 4.1e-14 80.5 48 83.3
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 4.1e-14 80.5 50 78.0
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 4.1e-14 80.5 50 78.0
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 4.1e-14 80.5 50 76.0
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 5.3e-14 80.1 50 80.0
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 1.2e-13 79.0 50 76.0
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 1.5e-13 78.6 50 74.0
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 2.0e-13 78.2 50 76.0
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 2.6e-13 77.8 49 73.5
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 7.7e-13 76.3 52 76.9
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 7.7e-13 76.3 52 76.9
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 1.3e-12 75.5 48 70.8
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 1.3e-12 75.5 52 76.9
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 2.9e-12 74.3 52 76.9
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 2.9e-12 74.3 51 76.5
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.8e-12 73.9 52 75.0
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.8e-12 73.9 52 75.0
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 1.4e-11 72.0 49 71.4
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 2.5e-11 71.2 50 66.0
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 3.2e-11 70.9 49 71.4
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 4.2e-11 70.5 52 69.2
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 4.2e-11 70.5 52 69.2
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.5e-11 70.1 52 69.2
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.5e-11 70.1 52 69.2
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 9.4e-11 69.3 52 69.2
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.2e-10 68.9 52 69.2
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.2e-10 68.9 52 69.2
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 1.2e-10 68.9 52 69.2
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 1.2e-10 68.9 52 69.2
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.2e-10 68.9 52 69.2
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 3.6e-10 67.4 49 67.3
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 7.9e-10 66.2 49 69.4
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.4e-09 65.5 49 69.4
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 3.0e-09 64.3 50 60.0
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 5.1e-09 63.5 43 67.4
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 8.8e-09 62.8 46 67.4
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 8.8e-09 62.8 46 67.4
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.5e-08 62.0 46 65.2
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 1.5e-08 62.0 46 65.2
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 2.6e-08 61.2 46 60.9
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 3.3e-08 60.8 46 60.9
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 3.3e-08 60.8 46 60.9
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 3.3e-08 60.8 46 65.2
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 4.4e-08 60.5 44 68.2
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 5.7e-08 60.1 38 73.7
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 1.7e-07 58.5 49 61.2
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 2.2e-07 58.2 46 60.9
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 3.7e-07 57.4 42 66.7
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 8.2e-07 56.2 46 58.7
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 1.1e-06 55.8 46 60.9
Ca_29279_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.4e-06 55.5 48 52.1
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 2.4e-06 54.7 46 60.9
SMO196G0139 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 2.4e-06 54.7 46 52.2
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 2.4e-06 54.7 48 62.5
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 5.3e-06 53.5 45 55.6


User provided reference genes

Program Settings