Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 3756.5 1912 100.0
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 2456.0 1921 68.7
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 2312.0 1955 64.6
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 2258.4 1901 65.1
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 2167.5 1907 63.2
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 2039.2 1953 59.4
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1869.7 1961 55.0
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1830.8 1956 53.1
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1822.0 1967 53.3
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1820.1 1618 59.4
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1815.0 1952 53.2
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1812.3 1993 52.3
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1803.5 1957 53.0
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1801.6 1979 52.8
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1801.2 1988 52.0
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1800.4 1958 53.2
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1800.4 1925 53.0
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1798.5 1957 52.9
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1795.0 1966 52.9
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1793.5 1966 52.5
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1792.3 1577 60.0
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1788.1 1828 55.0
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1777.3 1984 51.5
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1775.4 1918 53.3
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1774.6 1973 51.6
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1771.9 1544 60.2
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1770.0 1958 51.8
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1769.6 1837 53.2
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1756.9 1536 59.8
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1755.0 1838 53.2
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1752.6 1816 53.4
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1748.0 2103 49.5
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1748.0 1950 51.8
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1745.3 1944 51.6
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1730.3 1913 51.8
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1716.8 1827 53.0
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1713.7 1847 52.8
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1713.0 1998 49.2
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1709.1 1962 50.4
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1707.2 1980 50.8
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1704.9 1868 52.3
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1703.3 1990 50.7
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1703.3 1979 50.6
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1702.6 1839 52.4
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1702.2 1909 51.1
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1688.7 1900 51.5
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1687.9 1852 52.1
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1686.0 1860 52.5
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1681.4 1949 49.8
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1676.4 1959 49.6
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1670.6 1978 49.2
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1669.4 1948 50.4
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1667.9 1972 50.1
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1667.1 1972 50.3
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1662.9 1935 49.9
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1658.7 1862 51.6
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1657.1 1915 50.3
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1654.8 1933 49.4
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1654.4 2063 49.0
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1653.6 1967 49.3
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1651.3 1993 49.2
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1646.7 1958 49.9
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1646.7 1794 52.3
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1646.7 1794 52.3
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1644.4 1928 49.9
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1643.6 2000 48.5
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1637.1 1937 49.8
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1629.8 1973 49.0
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1629.4 1849 51.1
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1621.7 1964 48.8
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1612.0 1883 49.2
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1610.9 1941 48.5
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1606.3 1999 48.5
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1605.1 1881 49.3
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1597.0 1971 49.0
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1593.2 1953 48.5
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1590.5 1985 48.6
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1587.4 1988 48.4
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1585.1 1870 49.0
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1582.8 1869 49.0
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1581.2 1967 48.3
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1577.8 2018 46.9
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1573.9 1936 49.2
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1569.3 2000 46.9
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1563.9 1926 48.9
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1561.2 1734 51.7
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1560.4 1977 48.3
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1550.8 1595 53.1
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1550.0 1949 48.3
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1542.3 1471 55.7
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1535.8 2062 46.2
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1532.3 1887 47.7
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1518.8 1922 47.2
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1517.3 1634 53.7
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1501.5 1963 46.2
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1497.3 1298 59.9
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1375.5 1962 43.3
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1360.9 1239 57.7
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1353.2 1464 50.3
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 0.0e+00 1287.3 1892 42.9
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1170.6 1204 53.7
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 4.5e-302 1042.3 1792 40.0
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 6.7e-282 975.3 1673 36.8
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 3.3e-273 946.4 1827 35.8
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 3.0e-266 923.3 1130 50.5
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.1e-260 904.8 1968 33.6
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 6.1e-259 899.0 971 50.8
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 6.1e-259 899.0 1695 35.6
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 9.8e-241 838.6 894 51.5
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 2.0e-222 777.7 1163 43.4
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 1.2e-214 751.9 1055 45.6
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.3e-208 731.9 927 49.3
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.4e-199 701.8 1361 33.1
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.9e-199 701.4 1042 41.7
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 4.3e-196 690.3 1788 29.2
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.9e-192 677.6 1083 41.2
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.1e-178 632.5 1171 36.7
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 5.3e-170 603.6 571 56.4
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.3e-163 582.4 817 45.3
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 4.2e-143 514.2 539 53.4
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 2.2e-131 475.3 466 56.0
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 9.1e-122 443.4 665 42.4
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.9e-119 435.6 543 44.9
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.6e-118 432.6 570 43.3
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.4e-116 424.9 566 44.3
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 5.1e-88 331.3 633 39.5
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 1.8e-85 322.8 271 60.1
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-72 280.0 452 39.6
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 3.1e-61 242.3 244 52.0
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 8.2e-54 217.6 359 35.7
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 4.2e-50 205.3 379 36.9
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.6e-41 176.8 333 39.3
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.8e-40 173.3 506 30.8
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 3.0e-40 172.6 429 35.4
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 5.1e-40 171.8 703 30.3
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-39 170.6 167 50.9
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 6.9e-37 161.4 219 40.6
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 2.6e-36 159.5 139 54.0
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.9e-34 153.3 160 51.2
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 4.2e-34 152.1 159 52.2
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-29 137.5 160 46.9
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 7.0e-29 134.8 951 20.9
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.8e-27 129.0 139 50.4
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.5e-26 126.3 119 53.8
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.0e-23 116.7 113 49.6
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 3.3e-23 115.9 410 25.4
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.7e-22 113.6 80 67.5
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 9.1e-21 107.8 141 48.9
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.0e-19 104.4 217 34.6
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.9e-19 102.8 94 53.2
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.5e-15 90.5 88 56.8
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.3e-14 87.4 56 66.1
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-13 84.3 52 78.8
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 6.1e-09 68.6 139 34.5
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.4e-08 67.4 74 50.0
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 6.8e-08 65.1 160 33.8
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 7.5e-07 61.6 72 47.2


User provided reference genes

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