Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 4.6e-152 541.2 275 100.0
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 9.5e-105 384.0 265 75.5
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.8e-103 379.8 265 74.7
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 7.0e-100 367.9 266 74.4
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 5.4e-92 341.7 260 64.2
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 1.2e-91 340.5 264 67.0
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.6e-91 340.1 265 64.2
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 7.8e-91 337.8 243 66.7
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 2.5e-89 332.8 252 63.9
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 4.3e-89 332.0 265 65.3
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 5.6e-89 331.6 269 63.2
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 5.6e-89 331.6 248 66.1
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 5.6e-89 331.6 270 64.1
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 1.2e-88 330.5 274 62.4
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.6e-88 330.1 248 65.7
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 2.1e-88 329.7 269 62.8
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 4.7e-88 328.6 260 62.3
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 1.4e-87 327.0 273 62.3
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 1.8e-87 326.6 273 62.3
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 1.8e-87 326.6 269 61.7
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 3.1e-87 325.9 270 61.1
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 4.0e-87 325.5 280 60.0
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 6.8e-87 324.7 247 64.0
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 6.8e-87 324.7 261 64.4
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 6.8e-87 324.7 288 60.8
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 1.5e-86 323.6 245 63.3
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 2.0e-86 323.2 270 60.4
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 2.6e-86 322.8 268 63.8
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 2.6e-86 322.8 254 64.2
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 5.8e-86 321.6 261 62.5
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 7.5e-86 321.2 257 64.6
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 7.5e-86 321.2 259 61.8
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 9.8e-86 320.9 245 64.9
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 1.3e-85 320.5 248 64.9
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 2.2e-85 319.7 261 62.5
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 2.9e-85 319.3 261 62.1
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 3.7e-85 318.9 262 61.1
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 6.4e-85 318.2 254 61.8
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 1.9e-84 316.6 274 60.6
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 2.4e-84 316.2 268 62.3
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 2.4e-84 316.2 172 94.2
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 3.2e-84 315.8 247 65.2
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 4.1e-84 315.5 250 63.6
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 4.1e-84 315.5 253 61.3
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 7.1e-84 314.7 273 60.1
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 7.1e-84 314.7 251 63.3
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 9.2e-84 314.3 251 63.7
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 2.1e-83 313.2 244 63.1
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 2.1e-83 313.2 251 63.7
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 6.0e-83 311.6 263 58.6
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 7.8e-83 311.2 261 60.5
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 1.3e-82 310.5 275 58.9
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.3e-82 309.7 262 60.7
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 2.3e-82 309.7 261 60.2
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.3e-82 309.7 251 62.9
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 3.9e-82 308.9 246 60.6
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 5.1e-82 308.5 276 59.1
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 1.1e-81 307.4 262 57.3
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 1.1e-81 307.4 261 58.6
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 1.1e-81 307.4 265 58.5
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 1.5e-81 307.0 276 59.1
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 1.9e-81 306.6 271 57.9
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 2.5e-81 306.2 271 56.5
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 2.5e-81 306.2 274 59.5
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 3.3e-81 305.8 247 61.9
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 5.6e-81 305.1 262 58.0
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 9.5e-81 304.3 246 62.6
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 1.2e-80 303.9 246 60.2
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 1.2e-80 303.9 272 58.8
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 2.8e-80 302.8 263 57.8
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 1.8e-79 300.1 262 58.8
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 1.8e-79 300.1 260 60.8
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 2.3e-79 299.7 263 57.8
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 3.1e-79 299.3 261 57.5
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 3.1e-79 299.3 246 59.8
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 3.1e-79 299.3 275 58.9
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 8.9e-79 297.7 261 57.5
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 2.0e-78 296.6 249 61.0
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 2.0e-78 296.6 262 58.4
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 1.4e-76 290.4 245 63.7
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 4.1e-76 288.9 248 59.3
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 9.2e-76 287.7 245 63.3
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 3.5e-75 285.8 245 57.6
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 3.5e-75 285.8 225 63.1
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 1.4e-71 273.9 266 53.8
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 1.4e-71 273.9 250 55.6
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.4e-71 273.1 224 61.6
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 2.4e-71 273.1 246 57.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 1.5e-70 270.4 218 62.8
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 2.2e-69 266.5 246 57.3
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 8.4e-69 264.6 246 53.3
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 1.1e-68 264.2 249 55.8
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 4.2e-68 262.3 232 56.0
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.7e-66 256.9 259 52.5
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 1.6e-64 250.4 210 60.0
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.2e-62 244.2 208 63.9
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.9e-52 210.3 177 59.3
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 6.7e-50 201.8 277 40.8
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 6.7e-50 201.8 243 44.0
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 1.9e-49 200.3 232 46.1
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.8e-47 193.7 246 42.3
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 2.0e-46 190.3 143 62.2
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 4.3e-41 172.6 143 59.4
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 9.0e-39 164.9 269 38.3
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 3.4e-38 162.9 258 39.9
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 4.5e-38 162.5 158 54.4
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 6.5e-37 158.7 251 41.4
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 1.1e-36 157.9 234 41.0
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 4.1e-31 139.4 101 66.3
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.5e-25 120.9 103 58.3
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 3.6e-19 99.8 159 42.1
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 9.7e-17 91.7 120 46.7
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 9.1e-15 85.1 71 56.3
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.0e-13 81.6 228 26.3
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 6.5e-13 79.0 227 25.6
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 3.2e-12 76.6 258 24.8
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 2.1e-11 73.9 267 26.2
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 3.6e-11 73.2 236 25.4
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 6.3e-08 62.4 183 26.2
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 1.4e-07 61.2 183 26.2
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 1.4e-07 61.2 183 26.2
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 3.1e-07 60.1 227 24.7
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 5.3e-07 59.3 237 23.6
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 5.3e-07 59.3 113 31.9
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 7.0e-07 58.9 185 27.0
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 9.1e-07 58.5 183 25.1
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 9.1e-07 58.5 183 25.1
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 1.2e-06 58.2 183 24.0
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 1.6e-06 57.8 183 25.1
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.6e-06 57.8 183 25.1
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 2.0e-06 57.4 226 25.2
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 3.5e-06 56.6 183 24.0
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 7.7e-06 55.5 64 42.2


User provided reference genes

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