Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 6.8e-142 507.3 253 100.0
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 2.1e-111 406.0 251 80.9
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.4e-110 403.3 250 80.4
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.4e-110 403.3 250 80.4
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 3.4e-109 398.7 253 77.5
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 5.1e-105 384.8 251 76.1
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 8.7e-105 384.0 251 75.3
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 4.3e-104 381.7 253 74.7
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 1.8e-102 376.3 250 75.6
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 3.4e-101 372.1 251 74.5
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 7.6e-101 370.9 252 73.4
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 2.2e-100 369.4 250 71.2
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 4.9e-100 368.2 251 73.7
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 4.9e-100 368.2 251 72.9
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 3.2e-99 365.5 251 74.1
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 4.2e-99 365.2 253 71.5
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 4.2e-99 365.2 250 72.8
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 5.5e-99 364.8 259 71.0
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 5.5e-99 364.8 251 72.1
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 2.1e-98 362.8 250 72.0
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 2.1e-98 362.8 250 70.8
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 3.5e-98 362.1 251 71.3
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 4.6e-98 361.7 251 69.3
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 6.0e-98 361.3 251 69.3
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 6.0e-98 361.3 250 72.0
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 1.0e-97 360.5 252 70.2
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 1.8e-97 359.8 251 68.9
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 2.3e-97 359.4 253 72.3
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 3.9e-97 358.6 251 72.1
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 5.1e-97 358.2 249 72.3
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 5.1e-97 358.2 251 70.1
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 6.7e-97 357.8 251 70.1
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.1e-96 357.1 251 70.1
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.9e-96 356.3 252 70.6
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 2.5e-96 355.9 250 71.2
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 3.3e-96 355.5 259 70.3
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 4.3e-96 355.1 250 71.6
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 4.3e-96 355.1 255 69.8
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 4.3e-96 355.1 255 72.2
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 7.4e-96 354.4 274 67.2
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 9.7e-96 354.0 254 70.9
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 1.3e-95 353.6 255 69.4
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 1.6e-95 353.2 251 71.7
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 2.1e-95 352.8 252 69.8
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 2.8e-95 352.4 263 68.8
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 2.8e-95 352.4 254 70.5
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 3.7e-95 352.1 251 70.1
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 3.7e-95 352.1 252 69.8
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 4.8e-95 351.7 255 69.8
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 4.8e-95 351.7 250 71.2
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 6.3e-95 351.3 261 67.4
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 6.3e-95 351.3 251 68.5
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 6.3e-95 351.3 252 70.6
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 8.2e-95 350.9 252 71.8
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 1.8e-94 349.7 254 70.1
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 3.1e-94 349.0 252 67.9
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 4.1e-94 348.6 252 70.2
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 6.9e-94 347.8 249 69.9
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 1.2e-93 347.1 251 70.5
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 2.6e-93 345.9 251 66.9
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 3.4e-93 345.5 249 69.9
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 4.5e-93 345.1 257 68.9
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 5.9e-93 344.7 251 68.9
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 5.9e-93 344.7 250 68.0
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.0e-92 344.0 267 67.8
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 1.3e-92 343.6 252 68.7
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 1.3e-92 343.6 250 67.2
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 1.3e-92 343.6 250 67.2
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.3e-92 343.6 254 69.7
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.7e-92 343.2 252 69.8
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 2.2e-92 342.8 252 68.7
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 2.2e-92 342.8 252 68.7
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 6.5e-92 341.3 268 66.0
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 6.5e-92 341.3 254 67.7
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 2.5e-91 339.3 255 67.5
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 2.5e-91 339.3 255 67.5
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 3.2e-91 339.0 230 72.6
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 3.2e-91 339.0 256 67.2
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 3.2e-91 339.0 257 66.1
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 7.2e-91 337.8 257 65.0
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 7.2e-91 337.8 255 66.7
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 9.3e-91 337.4 255 66.3
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.6e-90 336.7 257 66.5
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 1.0e-89 334.0 255 67.1
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 1.0e-89 334.0 249 68.7
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 2.3e-89 332.8 253 64.8
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 8.7e-89 330.9 236 67.8
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 1.1e-88 330.5 236 69.1
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 1.1e-88 330.5 237 68.4
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 1.3e-87 327.0 302 58.3
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 1.3e-87 327.0 230 70.9
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.5e-85 320.1 236 67.8
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 3.4e-85 318.9 251 62.9
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 1.1e-83 313.9 255 62.0
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 7.2e-83 311.2 256 63.3
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 2.7e-82 309.3 223 70.9
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 4.4e-80 302.0 255 62.0
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 6.3e-79 298.1 231 64.9
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 1.1e-78 297.4 257 62.3
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 1.4e-78 297.0 253 59.3
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.8e-78 296.6 256 61.3
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.5e-77 293.5 201 71.6
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 5.0e-76 288.5 256 60.2
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.4e-75 287.0 202 71.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.8e-73 280.0 170 79.4
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 3.0e-73 279.3 255 59.6
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 5.3e-70 268.5 193 68.9
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 6.5e-68 261.5 165 75.2
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 4.2e-67 258.8 205 63.9
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 9.4e-67 257.7 233 57.9
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 6.7e-65 251.5 183 67.2
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 3.3e-64 249.2 243 53.5
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 2.4e-62 243.0 248 54.4
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 3.5e-61 239.2 176 68.8
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 4.2e-59 232.3 256 50.4
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 3.4e-56 222.6 220 55.5
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.7e-55 220.3 217 55.3
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 3.8e-52 209.1 255 49.4
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 1.2e-50 204.1 115 83.5
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 4.1e-46 189.1 135 65.9
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 2.0e-45 186.8 148 64.2
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.1e-43 181.0 101 82.2
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 6.0e-37 158.7 139 60.4
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.0e-36 157.9 268 38.1
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.2e-34 151.0 139 59.7
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 2.1e-26 123.6 65 84.6
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 5.2e-25 119.0 89 67.4
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 6.4e-23 112.1 117 52.1
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 3.2e-22 109.8 57 86.0
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 3.3e-19 99.8 74 67.6
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 4.7e-18 95.9 54 75.9
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 1.2e-16 91.3 73 67.1
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 3.4e-16 89.7 77 64.9
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 8.4e-15 85.1 76 60.5
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 5.4e-14 82.4 69 60.9
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 4.7e-10 69.3 43 74.4
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-09 67.8 60 60.0
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 6.4e-07 58.9 45 62.2
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 5.4e-06 55.8 119 33.6


User provided reference genes

Program Settings