Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 4.7e-258 894.0 460 100.0
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 3.4e-67 260.0 231 64.9
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 8.5e-66 255.4 275 55.3
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 4.2e-65 253.1 271 54.2
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 4.0e-47 193.4 202 52.0
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 8.8e-47 192.2 197 55.3
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.6e-46 190.7 169 62.1
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.3e-39 167.5 202 48.0
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 1.5e-38 164.9 237 44.3
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 1.5e-38 164.9 237 44.7
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.0e-38 164.5 237 43.9
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.6e-38 164.1 203 47.8
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.2e-37 161.0 237 43.5
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 4.1e-36 156.8 137 59.1
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 7.0e-36 156.0 230 42.2
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 9.2e-36 155.6 241 41.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.2e-35 155.2 189 48.1
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.0e-35 154.5 110 65.5
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 5.9e-35 152.9 276 40.6
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 5.9e-35 152.9 136 61.8
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 6.6e-34 149.4 139 56.8
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 6.6e-34 149.4 139 56.1
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 6.6e-34 149.4 111 71.2
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 8.6e-34 149.1 111 71.2
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 8.6e-34 149.1 139 56.1
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.1e-33 148.7 138 57.2
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 1.5e-33 148.3 139 56.1
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 1.5e-33 148.3 139 56.1
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 1.5e-33 148.3 139 56.1
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 3.3e-33 147.1 139 55.4
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 4.3e-33 146.7 117 62.4
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 5.6e-33 146.4 258 38.0
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 7.3e-33 146.0 139 56.1
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 9.5e-33 145.6 213 42.7
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.6e-32 144.8 215 43.3
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.1e-32 144.4 139 55.4
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.1e-32 144.4 139 55.4
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 2.1e-32 144.4 121 61.2
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 2.1e-32 144.4 112 66.1
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 2.8e-32 144.1 151 54.3
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 3.6e-32 143.7 134 56.7
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.7e-32 143.3 136 57.4
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.7e-32 143.3 136 57.4
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 4.7e-32 143.3 117 59.8
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 6.1e-32 142.9 136 55.1
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 6.1e-32 142.9 229 39.7
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 6.1e-32 142.9 118 61.0
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 6.1e-32 142.9 136 55.9
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.4e-31 141.7 136 56.6
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.4e-31 141.7 136 56.6
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.4e-31 141.7 121 63.6
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.0e-31 140.6 136 56.6
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 3.0e-31 140.6 164 48.2
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 4.0e-31 140.2 139 54.0
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 4.0e-31 140.2 141 53.2
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 5.2e-31 139.8 116 61.2
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 8.9e-31 139.0 136 52.9
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 8.9e-31 139.0 117 62.4
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.2e-30 138.7 121 62.0
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.2e-30 138.7 121 62.0
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.2e-30 138.7 121 62.0
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.2e-30 138.7 171 48.0
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.2e-30 138.7 139 52.5
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.5e-30 138.3 136 52.9
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 2.0e-30 137.9 139 52.5
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 3.4e-30 137.1 222 41.9
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 7.5e-30 136.0 227 37.9
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 7.5e-30 136.0 140 56.4
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 9.8e-30 135.6 182 45.6
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.3e-29 135.2 160 49.4
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.3e-29 135.2 158 49.4
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.7e-29 134.8 141 53.9
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 2.2e-29 134.4 118 60.2
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 4.9e-29 133.3 158 48.7
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 1.4e-28 131.7 123 57.7
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 3.2e-28 130.6 181 44.2
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 4.1e-28 130.2 119 56.3
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 5.4e-28 129.8 139 52.5
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 5.4e-28 129.8 139 54.0
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 9.2e-28 129.0 111 58.6
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.7e-27 127.5 204 42.2
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 3.5e-27 127.1 106 60.4
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 6.0e-27 126.3 140 52.1
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 6.0e-27 126.3 84 73.8
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.3e-26 125.2 120 54.2
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 2.3e-26 124.4 134 52.2
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.9e-26 123.6 132 49.2
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.9e-26 123.6 120 52.5
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 6.6e-26 122.9 114 58.8
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.5e-25 121.7 129 55.0
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.9e-25 121.3 132 48.5
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 2.5e-25 120.9 207 41.5
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 5.6e-25 119.8 116 56.9
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 7.3e-25 119.4 127 50.4
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 1.6e-24 118.2 115 55.7
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 2.8e-24 117.5 141 49.6
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 2.8e-24 117.5 141 49.6
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 3.6e-24 117.1 127 49.6
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.4e-23 115.2 122 50.8
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.2e-22 112.1 95 63.2
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 7.5e-22 109.4 110 46.4
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.4e-20 105.1 200 38.5
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 9.2e-20 102.4 150 44.0
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 2.0e-19 101.3 166 39.8
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 3.5e-19 100.5 117 52.1
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 7.8e-19 99.4 106 50.0
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.0e-18 99.0 112 50.0
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 2.3e-18 97.8 135 45.9
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 6.6e-18 96.3 114 50.0
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.6e-18 96.3 114 48.2
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.6e-18 96.3 114 48.2
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 4.3e-17 93.6 90 54.4
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 3.6e-16 90.5 64 62.5
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 6.8e-15 86.3 72 55.6
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 5.8e-14 83.2 204 32.4
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.9e-13 80.9 192 33.9
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 4.1e-12 77.0 84 51.2
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 3.3e-09 67.4 84 47.6
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 1.2e-08 65.5 43 65.1
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.6e-08 65.1 77 44.2
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 3.6e-08 63.9 146 32.2
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.5e-06 58.5 106 36.8


User provided reference genes

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