Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 9.9e-89 330.1 167 100.0
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 9.3e-71 270.4 190 74.2
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 4.8e-59 231.5 180 69.4
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 1.8e-58 229.6 183 67.8
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.2e-54 216.9 140 75.0
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 1.5e-52 209.9 169 64.5
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 7.4e-52 207.6 163 66.3
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.1e-50 203.8 163 64.4
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 2.0e-49 199.5 168 62.5
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 5.8e-49 198.0 163 61.3
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 7.6e-49 197.6 168 60.7
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 7.6e-49 197.6 163 62.0
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 2.2e-48 196.1 174 60.3
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 2.2e-48 196.1 163 61.3
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 2.2e-48 196.1 162 62.3
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 6.5e-48 194.5 161 62.7
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 8.4e-48 194.1 163 58.3
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 1.4e-47 193.4 162 61.1
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.4e-47 193.4 174 58.0
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 2.5e-47 192.6 163 62.0
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 2.5e-47 192.6 174 57.5
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 4.2e-47 191.8 168 60.7
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 4.2e-47 191.8 168 60.7
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 9.3e-47 190.7 162 62.3
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 1.2e-46 190.3 171 59.6
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.2e-46 190.3 168 57.1
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.6e-46 189.9 167 60.5
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.3e-45 186.8 182 56.6
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 3.0e-45 185.7 169 58.6
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 3.0e-45 185.7 162 59.9
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.1e-45 184.9 162 60.5
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 5.1e-45 184.9 162 60.5
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 8.7e-45 184.1 162 59.9
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.1e-44 183.7 162 61.1
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.5e-44 183.3 173 56.1
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 2.5e-44 182.6 162 59.3
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.3e-44 182.2 170 57.1
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 4.3e-44 181.8 168 58.3
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 7.4e-44 181.0 162 58.0
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.6e-43 179.9 163 55.8
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 2.8e-43 179.1 154 61.7
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 2.8e-43 179.1 154 61.7
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.8e-43 179.1 169 54.4
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.3e-43 177.9 164 56.1
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 6.3e-43 177.9 169 55.6
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 3.1e-42 175.6 163 54.6
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 4.1e-42 175.3 167 56.3
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 4.1e-42 175.3 174 51.7
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 5.3e-42 174.9 203 46.8
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 6.9e-42 174.5 151 58.3
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 6.9e-42 174.5 163 55.8
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 9.0e-42 174.1 179 53.1
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.2e-41 173.7 162 56.2
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.5e-41 173.3 164 54.9
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 2.0e-41 172.9 163 55.2
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 2.0e-41 172.9 169 53.3
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 2.0e-41 172.9 172 54.1
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 2.6e-41 172.6 154 58.4
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 4.5e-41 171.8 169 56.2
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 2.2e-40 169.5 163 55.8
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 6.5e-40 167.9 176 52.3
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 8.5e-40 167.5 154 57.8
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.1e-39 167.2 169 54.4
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.1e-39 167.2 169 54.4
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.1e-39 167.2 169 54.4
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.4e-39 166.8 154 57.1
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 3.2e-39 165.6 169 54.4
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 3.2e-39 165.6 168 54.2
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 3.2e-39 165.6 169 54.4
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 3.2e-39 165.6 168 54.2
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 5.5e-39 164.9 171 52.0
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 7.2e-39 164.5 163 54.6
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 1.2e-38 163.7 170 54.1
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.2e-38 163.7 162 54.3
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 2.1e-38 162.9 162 54.9
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.7e-38 162.5 163 50.9
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 3.6e-38 162.2 167 52.7
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 3.6e-38 162.2 162 53.7
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 7.9e-38 161.0 167 53.9
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 7.9e-38 161.0 163 53.4
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.0e-37 160.6 162 54.3
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.4e-37 160.2 165 55.2
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.4e-37 160.2 165 55.2
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.4e-37 160.2 165 55.2
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 8.8e-37 157.5 168 51.2
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 8.8e-37 157.5 136 64.7
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-36 156.8 162 54.9
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.5e-36 156.8 160 55.0
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 3.3e-36 155.6 163 53.4
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 9.7e-36 154.1 169 52.1
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.7e-35 153.3 172 48.8
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 2.2e-35 152.9 169 49.1
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 9.1e-34 147.5 166 49.4
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 4.5e-33 145.2 124 61.3
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.0e-32 144.1 152 54.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 8.5e-32 141.0 164 51.2
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 5.1e-29 131.7 124 56.5
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 2.6e-28 129.4 180 45.0
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 3.7e-27 125.6 180 44.4
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 4.1e-26 122.1 163 42.9
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.6e-25 119.4 161 40.4
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-23 111.7 163 42.9
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-22 109.0 182 40.1
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 4.7e-22 108.6 184 40.8
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 8.8e-21 104.4 181 35.9
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.6e-20 102.8 73 64.4
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-18 97.4 166 39.2
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-18 97.4 165 42.4
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 4.1e-18 95.5 69 65.2
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 7.0e-18 94.7 69 66.7
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 4.5e-17 92.0 69 62.3
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 4.5e-17 92.0 109 47.7
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-16 90.1 175 39.4
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-16 89.7 186 34.4
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 2.2e-16 89.7 108 50.0
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-15 86.3 178 33.1
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 1.2e-14 84.0 136 36.8
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-14 83.6 178 30.9
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-14 82.8 187 32.6
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-13 79.0 153 34.0
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.5e-12 77.0 140 37.1
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 4.4e-12 75.5 187 33.7
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 5.7e-12 75.1 142 35.2
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.5e-12 74.7 161 30.4
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 1.3e-11 73.9 136 36.0
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 2.2e-11 73.2 127 44.1
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.8e-11 72.8 150 33.3
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 8.2e-11 71.2 167 32.3
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-10 70.5 174 31.6
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-10 70.1 100 42.0
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.1e-10 69.3 140 35.7
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 7.0e-10 68.2 174 29.9
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 7.0e-10 68.2 169 32.0
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-09 67.0 135 29.6
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 2.0e-09 66.6 44 72.7
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-09 65.9 164 29.3
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-07 60.1 181 29.3
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-06 57.4 162 27.2
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-06 55.8 126 32.5


User provided reference genes

Program Settings