Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 7.3e-228 793.5 388 100.0
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 6.4e-131 471.5 422 60.9
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 2.5e-127 459.5 408 60.5
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 6.2e-126 454.9 389 60.4
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 2.1e-118 429.9 385 57.9
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 7.5e-116 421.4 347 61.7
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.3e-115 420.6 390 57.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.0e-112 409.5 393 57.0
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 7.3e-111 404.8 413 56.2
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.3e-111 404.8 392 56.1
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.1e-109 401.0 386 54.9
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.4e-109 400.6 384 56.5
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 1.2e-108 397.5 412 53.6
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.5e-108 397.1 417 53.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 3.4e-108 396.0 418 52.9
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 5.8e-108 395.2 402 54.2
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 2.9e-107 392.9 388 54.9
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.9e-107 392.9 374 55.9
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 4.9e-107 392.1 382 55.5
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.4e-107 391.7 404 53.5
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.2e-106 389.4 397 54.7
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.2e-106 389.4 287 67.2
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 7.1e-106 388.3 298 65.8
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.2e-105 387.5 404 52.5
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.6e-105 387.1 418 51.9
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 2.1e-105 386.7 412 51.7
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.0e-105 385.2 406 52.2
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.0e-104 384.4 316 60.8
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 2.3e-104 383.3 334 59.6
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 3.9e-104 382.5 376 54.0
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 6.6e-104 381.7 391 52.4
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.6e-104 381.7 404 52.0
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.1e-103 380.9 417 50.4
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 4.3e-103 379.0 430 50.5
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 4.3e-103 379.0 389 53.0
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 4.3e-103 379.0 451 49.7
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 5.6e-103 378.6 384 51.0
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 7.3e-103 378.3 364 55.5
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 1.6e-102 377.1 385 51.9
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.6e-102 375.9 399 50.1
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.8e-102 375.6 380 53.4
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 8.1e-102 374.8 356 56.2
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 2.4e-101 373.2 391 52.9
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 3.1e-101 372.9 288 64.9
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 1.2e-100 370.9 391 52.9
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.5e-100 370.5 369 54.2
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.5e-100 370.5 401 51.4
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.6e-100 369.8 380 52.4
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 4.4e-100 369.0 415 51.3
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.3e-99 367.5 381 52.0
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 2.2e-99 366.7 389 51.4
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 2.9e-99 366.3 378 52.9
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 2.9e-99 366.3 406 50.5
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 8.4e-99 364.8 380 52.6
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.9e-98 363.6 401 51.4
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.9e-98 363.6 373 51.2
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 3.2e-98 362.8 440 49.3
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 4.2e-98 362.5 308 59.1
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.4e-98 362.1 385 51.7
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 9.3e-98 361.3 408 50.0
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 4.6e-97 359.0 465 46.2
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 6.0e-97 358.6 406 49.5
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.7e-96 357.1 319 55.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 1.7e-96 357.1 394 51.8
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.3e-96 356.7 371 52.8
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.1e-95 354.4 407 50.4
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.9e-95 353.6 289 60.2
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.9e-95 353.6 394 49.7
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.5e-95 353.2 372 52.2
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.5e-95 353.2 372 52.2
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 4.3e-95 352.4 406 49.5
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 5.6e-95 352.1 384 52.3
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 9.6e-95 351.3 396 50.3
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 2.1e-94 350.1 371 52.0
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 2.1e-94 350.1 371 52.0
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 4.8e-94 349.0 386 49.7
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 3.1e-93 346.3 288 59.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 5.3e-93 345.5 298 59.7
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 6.9e-93 345.1 382 52.4
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.5e-92 344.0 385 47.3
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 3.4e-92 342.8 288 58.3
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 7.6e-92 341.7 410 48.8
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 9.9e-92 341.3 375 50.4
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.1e-90 337.8 365 51.5
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.4e-90 336.7 371 50.1
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 5.4e-90 335.5 396 50.5
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.2e-89 334.3 302 57.0
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.7e-89 333.2 371 48.0
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 4.6e-89 332.4 371 49.1
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.1e-87 327.8 394 44.4
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.1e-87 327.8 396 44.9
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 4.8e-86 322.4 308 56.2
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 2.4e-85 320.1 383 46.0
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 3.1e-85 319.7 290 55.9
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 9.0e-85 318.2 289 54.0
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 2.0e-84 317.0 255 61.6
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 3.4e-84 316.2 395 45.1
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 4.5e-84 315.8 396 48.5
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 5.8e-84 315.5 408 45.6
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 7.6e-84 315.1 275 58.5
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 7.6e-84 315.1 391 48.3
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.7e-83 313.9 395 47.3
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.2e-83 313.5 296 52.7
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 2.9e-83 313.2 273 58.6
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 6.4e-83 312.0 275 58.2
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 3.2e-82 309.7 273 58.2
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 3.2e-82 309.7 273 58.2
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 3.2e-82 309.7 368 45.7
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 4.2e-82 309.3 394 46.4
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.9e-79 300.4 255 58.0
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 4.8e-78 295.8 295 52.9
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 1.0e-75 288.1 414 41.1
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 2.8e-70 270.0 405 41.5
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.1e-69 268.1 308 48.4
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.4e-69 266.9 188 72.3
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 2.9e-67 260.0 287 49.1
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 3.0e-64 250.0 170 69.4
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.7e-64 248.8 259 53.7
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 9.1e-61 238.4 324 44.1
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.6e-60 236.9 302 42.4
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 2.5e-58 230.3 242 52.5
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 1.2e-57 228.0 239 54.4
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.7e-57 226.9 264 48.5
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 2.8e-54 216.9 278 40.6
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 2.5e-50 203.8 142 69.7
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.2e-49 201.4 288 39.6
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 3.0e-48 196.8 295 37.3
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 8.8e-48 195.3 136 67.6
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.8e-45 187.6 287 40.1
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-42 177.9 143 62.2
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 8.0e-41 172.2 256 36.7
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.8e-40 169.1 95 78.9
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 4.1e-37 159.8 235 43.8
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 5.4e-37 159.5 244 34.4
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.0e-31 141.0 99 66.7
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.5e-31 139.0 106 62.3
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.1e-29 133.7 190 38.4
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.0e-28 131.0 188 38.8
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 7.7e-28 129.0 107 57.9
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 6.6e-27 125.9 176 44.9
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.2e-23 115.2 69 71.0
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.8e-23 112.1 63 79.4
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.1e-21 106.7 86 58.1
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 3.5e-20 103.6 77 62.3
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 7.8e-20 102.4 266 28.6
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 2.9e-19 100.5 75 64.0
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 9.5e-18 95.5 51 80.4
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 4.7e-17 93.2 185 35.7
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.8e-16 89.4 53 81.1
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.8e-16 89.4 49 77.6
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-15 88.2 53 79.2
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.0e-15 87.8 165 41.2
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 5.8e-15 86.3 108 44.4
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 9.8e-15 85.5 91 47.3
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.3e-14 85.1 171 32.2
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.6e-12 78.2 79 49.4
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.9e-11 73.6 75 49.3
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.1e-10 72.0 84 42.9
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.6e-09 67.0 49 69.4


User provided reference genes

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