Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 2.0e-151 539.3 309 100.0
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 7.3e-146 520.8 309 96.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.5e-94 348.2 333 68.8
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.7e-92 342.8 333 67.6
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.9e-92 341.3 333 67.3
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.8e-91 340.1 333 67.0
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.0e-91 339.3 336 65.2
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 3.0e-91 339.3 336 65.5
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 3.9e-91 339.0 345 65.2
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.1e-90 337.4 335 65.7
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.5e-90 336.3 336 63.4
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 4.3e-90 335.5 336 63.4
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 4.3e-90 335.5 336 65.2
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.3e-89 334.0 344 63.4
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.3e-89 334.0 336 63.1
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.2e-89 333.2 344 64.5
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.8e-89 332.8 333 66.1
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 6.3e-89 331.6 335 65.1
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.2e-87 327.4 344 63.7
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.0e-86 322.0 339 62.5
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 5.0e-86 322.0 356 61.0
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 9.4e-85 317.8 339 61.9
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.2e-84 317.4 331 62.5
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.6e-84 317.0 344 60.8
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 6.1e-84 315.1 347 58.2
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 3.0e-83 312.8 347 57.9
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.0e-83 312.8 337 61.7
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 8.8e-83 311.2 340 62.1
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 5.7e-82 308.5 342 61.4
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 9.7e-82 307.8 342 59.1
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.7e-81 307.0 338 61.8
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.7e-81 307.0 338 61.8
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.7e-81 307.0 338 62.1
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.7e-81 307.0 351 59.3
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 3.7e-81 305.8 337 61.1
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 6.3e-81 305.1 347 58.8
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 8.2e-81 304.7 349 57.9
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 8.2e-81 304.7 338 58.6
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.1e-80 304.3 342 58.5
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.1e-80 304.3 350 59.4
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.4e-80 303.9 344 59.9
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.8e-80 303.5 343 60.6
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 4.1e-80 302.4 332 60.2
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 4.1e-80 302.4 347 58.8
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 4.1e-80 302.4 348 57.8
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 4.1e-80 302.4 345 59.4
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.2e-79 300.8 345 59.4
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.5e-79 300.4 342 57.6
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.4e-79 299.3 342 58.2
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 3.4e-79 299.3 332 61.1
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 3.4e-79 299.3 348 58.9
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.0e-78 297.7 348 58.0
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.0e-78 297.7 333 60.7
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 2.2e-78 296.6 338 57.4
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 2.9e-78 296.2 352 56.8
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.8e-78 295.8 355 56.1
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 5.0e-78 295.4 346 58.1
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 8.5e-78 294.7 351 57.0
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.1e-77 294.3 349 56.7
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.1e-77 294.3 342 58.8
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.1e-77 294.3 349 54.7
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.1e-77 294.3 339 59.9
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.4e-77 293.9 348 59.8
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.4e-77 293.9 352 57.4
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.9e-77 293.5 335 60.0
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.9e-77 293.5 336 58.0
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 2.5e-77 293.1 343 58.9
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.5e-77 293.1 348 57.8
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 4.2e-77 292.4 344 57.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 4.2e-77 292.4 349 58.2
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 5.5e-77 292.0 344 57.6
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.5e-77 292.0 351 57.0
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 5.5e-77 292.0 335 58.2
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 5.5e-77 292.0 355 56.1
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 5.5e-77 292.0 355 56.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 5.5e-77 292.0 348 56.6
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 5.5e-77 292.0 349 57.6
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 7.2e-77 291.6 346 57.5
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.1e-76 290.0 344 57.0
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.1e-76 290.0 356 57.3
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.1e-76 290.0 353 56.9
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.7e-76 289.7 344 57.3
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 2.7e-76 289.7 349 54.7
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.6e-76 289.3 352 57.1
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 4.7e-76 288.9 344 55.8
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 4.7e-76 288.9 334 59.0
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 6.1e-76 288.5 347 56.2
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.8e-75 287.0 334 57.2
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 1.8e-75 287.0 347 55.6
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 2.3e-75 286.6 348 54.3
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 5.1e-75 285.4 335 57.6
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 5.1e-75 285.4 332 56.6
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-74 284.3 344 55.5
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.6e-74 283.1 347 55.0
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.3e-74 282.7 341 56.6
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 3.3e-74 282.7 368 52.7
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 4.4e-74 282.3 342 56.7
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 4.4e-74 282.3 349 55.6
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 5.7e-74 282.0 355 55.5
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.7e-74 282.0 343 56.9
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.3e-73 280.8 351 52.7
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 2.8e-73 279.6 335 56.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.8e-73 279.6 352 55.1
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 8.2e-73 278.1 347 54.8
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 8.2e-73 278.1 347 54.8
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-72 277.7 338 56.2
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-72 276.6 325 56.0
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 5.3e-72 275.4 347 56.8
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.6e-71 273.9 347 54.5
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.6e-71 273.9 347 50.7
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 2.0e-71 273.5 349 56.2
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.0e-71 273.5 339 51.6
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.6e-71 273.1 352 55.7
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 4.5e-71 272.3 347 52.4
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.7e-70 270.4 352 53.1
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 8.5e-70 268.1 346 55.5
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 4.2e-69 265.8 345 53.3
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 7.2e-69 265.0 260 58.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.7e-65 253.8 328 51.2
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 1.7e-65 253.8 337 53.1
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 6.1e-60 235.3 346 48.0
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.2e-57 226.9 345 51.0
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 8.3e-57 224.9 262 50.0
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.2e-55 221.1 336 50.3
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.6e-55 220.7 351 43.6
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.1e-52 208.8 245 58.0
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 8.8e-51 204.9 341 45.7
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 1.5e-50 204.1 260 48.5
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.8e-49 199.9 351 41.9
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 5.4e-48 195.7 347 44.7
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.6e-47 194.1 308 44.5
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.3e-46 190.3 327 47.1
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 6.1e-44 182.2 176 62.5
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 2.1e-36 157.1 269 46.5
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 2.1e-36 157.1 269 46.5
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.0e-35 154.8 242 43.8
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.8e-35 154.1 344 40.4
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.4e-34 149.4 320 45.6
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.1e-32 144.8 325 35.4
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.9e-32 144.1 155 51.6
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 2.4e-32 143.7 178 53.9
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.9e-29 134.0 350 37.7
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.7e-25 120.9 296 37.8
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.2e-25 120.6 233 36.5
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.2e-24 116.7 149 52.3
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 9.2e-24 115.2 103 65.0
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 6.0e-23 112.5 219 40.6
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 9.5e-21 105.1 103 57.3
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.6e-20 104.4 249 31.7
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 4.0e-19 99.8 155 54.8
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.3e-14 84.7 122 50.0
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 9.6e-13 78.6 106 65.1
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 8.4e-09 65.5 216 28.2
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 1.0e-06 58.5 96 37.5


User provided reference genes

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