Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 9.3e-110 400.2 201 100.0
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 3.9e-84 315.1 199 77.9
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 9.7e-75 283.9 196 68.9
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 7.2e-70 267.7 203 64.5
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 8.8e-68 260.8 201 63.2
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 5.7e-67 258.1 197 64.0
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 3.8e-63 245.4 195 60.0
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.5e-62 243.4 195 59.0
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 6.1e-61 238.0 199 57.8
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 8.0e-61 237.7 197 57.4
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 8.0e-61 237.7 193 58.0
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.0e-60 237.3 199 54.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 6.8e-60 234.6 199 57.3
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 6.8e-60 234.6 199 57.3
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 6.8e-60 234.6 194 56.7
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.0e-59 233.0 192 58.3
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 2.6e-59 232.6 199 55.8
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 3.4e-59 232.3 195 56.9
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.7e-59 231.5 192 57.8
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 5.7e-59 231.5 192 54.7
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.7e-59 231.5 191 57.1
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 7.5e-59 231.1 197 54.8
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.3e-58 230.3 192 58.3
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.3e-58 230.3 196 55.6
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.3e-58 230.3 199 54.3
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 2.8e-58 229.2 199 54.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.9e-58 228.4 192 57.3
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 8.3e-58 227.6 197 55.3
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 8.3e-58 227.6 197 56.3
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 8.3e-58 227.6 190 56.8
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.1e-57 227.3 196 54.6
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-57 227.3 195 55.9
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.8e-57 226.5 187 58.3
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.8e-57 226.5 199 53.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.4e-57 226.1 192 56.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.4e-57 226.1 193 57.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 3.1e-57 225.7 195 54.4
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 3.1e-57 225.7 195 54.4
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.1e-57 225.7 191 57.1
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 5.4e-57 224.9 199 54.8
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.2e-56 223.8 193 57.0
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.6e-56 223.4 196 53.6
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.0e-56 223.0 197 55.8
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 4.5e-56 221.9 196 55.6
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.5e-56 221.9 195 53.8
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 5.9e-56 221.5 191 56.0
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 7.8e-56 221.1 196 54.1
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.8e-56 221.1 192 54.7
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.3e-55 220.3 196 54.1
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.3e-55 220.3 196 54.1
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.3e-55 220.3 193 55.4
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.7e-55 219.9 197 54.3
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.9e-55 219.2 199 54.3
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.6e-55 218.0 203 53.2
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 6.6e-55 218.0 196 54.6
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 6.6e-55 218.0 195 52.3
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 8.6e-55 217.6 197 55.3
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 8.6e-55 217.6 194 54.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-54 216.9 195 53.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.9e-54 216.5 195 53.3
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 2.5e-54 216.1 195 53.3
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.5e-54 216.1 195 53.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.3e-54 215.7 195 52.8
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 3.3e-54 215.7 194 53.1
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 4.3e-54 215.3 199 51.8
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 5.6e-54 214.9 174 59.2
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 7.3e-54 214.5 199 53.8
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.2e-53 213.8 195 51.8
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.6e-53 213.4 199 55.3
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 52.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.1e-53 213.0 194 53.6
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.1e-53 213.0 195 53.3
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 3.6e-53 212.2 196 54.1
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 6.1e-53 211.5 195 51.3
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.0e-53 211.1 186 54.8
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.8e-52 209.9 196 53.1
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.8e-52 209.9 191 52.9
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.3e-52 209.5 195 51.3
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 3.1e-52 209.1 200 53.0
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 5.2e-52 208.4 246 45.1
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 5.2e-52 208.4 197 51.8
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.2e-52 208.4 196 54.1
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 5.2e-52 208.4 195 50.8
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.5e-51 206.8 185 53.0
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.0e-51 206.5 191 53.4
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 2.6e-51 206.1 195 52.8
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.6e-51 206.1 191 53.9
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.4e-51 205.7 191 51.3
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 3.4e-51 205.7 197 50.8
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 4.4e-51 205.3 201 51.7
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 7.5e-51 204.5 201 50.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 9.8e-51 204.1 191 53.4
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 9.8e-51 204.1 195 49.2
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 9.8e-51 204.1 191 50.8
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 9.8e-51 204.1 195 52.8
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.7e-50 203.4 189 47.6
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.7e-50 203.4 202 52.5
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.9e-50 202.6 191 53.4
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.7e-50 202.2 191 51.3
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.7e-50 202.2 181 55.8
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 4.9e-50 201.8 191 53.9
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.4e-50 201.4 191 51.3
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 6.4e-50 201.4 191 53.9
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 8.3e-50 201.1 193 47.2
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 191 53.4
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 194 51.0
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.4e-49 198.4 193 52.3
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 7.0e-49 198.0 193 46.6
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.2e-49 197.6 195 49.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.2e-48 197.2 202 50.5
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-48 197.2 191 52.4
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.6e-48 196.8 189 47.6
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.6e-48 196.8 189 47.1
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 4.6e-48 195.3 189 48.1
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.6e-48 195.3 187 51.3
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 4.6e-48 195.3 199 48.2
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.0e-48 194.9 196 50.5
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.0e-48 194.9 195 50.3
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 6.0e-48 194.9 192 52.1
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 7.8e-48 194.5 189 48.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 7.8e-48 194.5 195 50.3
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-47 193.7 191 52.9
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 3.0e-47 192.6 175 57.1
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 6.6e-47 191.4 189 46.6
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 8.6e-47 191.0 202 48.0
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 8.6e-47 191.0 189 47.1
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 8.6e-47 191.0 146 59.6
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 8.6e-47 191.0 187 49.7
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.5e-46 190.3 189 46.6
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.5e-46 190.3 190 51.6
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.9e-46 189.9 189 47.1
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-46 189.9 191 51.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 5.6e-46 188.3 191 51.8
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 9.5e-46 187.6 174 53.4
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-44 184.1 179 52.0
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.8e-44 183.3 189 46.0
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.4e-43 179.1 147 56.5
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 5.8e-43 178.3 190 45.3
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 7.5e-43 177.9 195 46.7
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.2e-42 176.4 191 48.2
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.9e-42 176.0 191 48.2
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.7e-42 175.6 187 44.9
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 8.3e-42 174.5 166 48.2
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 9.2e-41 171.0 189 42.9
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.7e-40 169.5 165 50.9
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 6.0e-40 168.3 192 42.7
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 2.3e-39 166.4 143 52.4
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 3.9e-39 165.6 192 45.3
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.1e-38 164.1 192 45.3
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.3e-38 162.2 162 48.8
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.2e-35 154.1 147 49.7
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.5e-35 151.4 136 53.7
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.5e-35 151.4 190 43.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.9e-35 151.0 156 47.4
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 2.4e-33 146.4 188 40.4
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 3.2e-33 146.0 196 42.3
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.1e-33 145.6 160 49.4
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 5.4e-33 145.2 126 53.2
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 6.0e-32 141.7 149 45.6
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-30 137.1 161 46.6
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 4.3e-30 135.6 194 37.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.1e-29 133.3 128 50.8
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 9.9e-27 124.4 113 53.1
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.6e-22 107.8 194 34.5
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.6e-19 99.8 180 33.3
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.1e-17 94.4 112 43.8
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 4.2e-17 92.4 196 32.7
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.2e-16 90.9 105 47.6
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.5e-14 84.0 84 47.6
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.9e-14 83.6 184 32.6
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 4.8e-13 79.0 210 27.6
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 8.1e-13 78.2 164 31.1
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.5e-11 72.4 164 30.5
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.3e-10 70.9 199 26.1
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.3e-10 70.9 157 29.3
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.1e-09 67.8 76 43.4
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 5.6e-06 55.5 81 43.2
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.4e-06 55.1 91 39.6


User provided reference genes

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