Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1984.9 995 100.0
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1806.2 995 90.6
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1770.7 992 89.1
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1715.3 996 85.7
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1710.7 994 85.6
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1708.0 996 85.4
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1707.6 995 86.1
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1706.8 993 85.8
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1696.0 1004 84.4
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1693.3 996 84.0
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1691.8 993 84.1
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1687.9 993 84.2
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1687.2 993 84.3
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1685.2 994 84.1
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1684.8 994 84.3
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1684.5 1005 83.5
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1683.7 996 84.1
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1683.3 993 83.8
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 994 84.4
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 994 84.0
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1681.0 993 84.4
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1679.1 996 82.8
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1677.9 993 83.8
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1672.9 993 83.5
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1671.0 993 83.6
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1670.6 1027 82.0
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1669.1 989 84.0
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1661.0 993 82.7
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1658.7 994 82.8
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1656.0 1004 82.5
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1654.4 993 82.3
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1652.9 995 83.3
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1650.6 994 83.1
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1650.2 994 82.5
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1647.5 1011 81.5
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1647.1 994 82.5
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1646.7 1011 81.5
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 997 82.7
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1645.6 994 82.6
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1642.9 996 81.9
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1642.5 997 81.9
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1634.8 998 81.8
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1632.8 1011 80.9
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1631.7 996 81.1
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 992 81.8
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1627.8 1019 80.7
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1625.5 991 81.1
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1624.8 996 81.3
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1623.6 994 80.8
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1622.4 1088 75.8
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1618.2 1000 80.2
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1614.0 996 80.6
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1613.2 993 80.8
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1612.8 995 81.3
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1612.4 994 80.6
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1610.5 1074 76.7
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1610.1 990 80.4
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1609.0 995 80.3
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1609.0 994 80.2
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1608.6 994 80.1
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1608.6 995 80.5
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1605.5 999 81.6
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1604.7 995 80.6
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1601.6 995 80.7
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1601.3 1003 79.2
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1598.9 997 79.5
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1597.8 994 79.9
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1597.8 1012 79.1
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1597.4 995 79.5
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1592.0 995 79.7
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1592.0 994 80.4
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1590.5 1003 79.1
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1588.5 1005 78.8
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1586.2 994 79.2
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1586.2 990 80.1
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1584.7 994 79.2
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1579.3 993 80.3
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1570.4 996 78.5
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1566.6 984 79.4
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1558.5 942 82.3
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1556.6 1020 77.4
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1550.0 996 78.1
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1538.9 942 81.1
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1536.9 1031 76.2
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1534.6 999 75.6
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1534.2 1037 75.0
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1514.2 997 77.5
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1476.5 996 75.4
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1475.7 936 79.6
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1455.3 860 85.8
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1451.8 903 79.8
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1443.3 991 72.9
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1418.7 853 82.2
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1414.1 758 93.1
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1409.8 822 85.8
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1391.3 999 71.0
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1338.2 796 84.3
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1334.7 792 83.6
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1321.2 1001 70.3
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1318.1 792 83.5
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1311.2 799 83.0
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1306.6 779 84.0
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1302.0 759 85.8
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1297.0 957 69.4
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1190.3 990 61.0
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1190.3 1008 60.6
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1176.4 764 78.7
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1171.4 778 76.9
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.4e-301 1038.1 618 84.3
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.7e-300 1036.2 979 53.9
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 9.8e-293 1010.4 796 62.2
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 8.0e-287 990.7 560 88.2
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.3e-284 983.4 666 74.8
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 5.4e-283 978.0 649 76.7
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.6e-264 914.8 580 80.3
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.7e-260 903.3 517 87.6
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 7.6e-245 851.3 618 67.6
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.3e-239 833.9 526 79.1
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 3.6e-194 682.9 425 78.4
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 4.5e-165 586.3 343 84.0
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.8e-160 568.5 337 83.7
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.3e-147 525.8 282 91.5
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 4.6e-125 453.4 1080 31.0
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 7.3e-123 446.0 249 88.8
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 3.1e-121 440.7 237 89.5
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 5.1e-108 396.7 267 78.3
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.9e-107 394.8 229 81.7
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.5e-107 394.4 1035 29.5
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.6e-104 384.4 1270 27.5
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 5.9e-96 356.7 204 85.3
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 3.6e-93 347.4 232 74.1
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 1.5e-91 342.0 207 78.7
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 1.5e-83 315.5 178 84.3
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.3e-79 302.4 198 74.7
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.6e-77 295.4 271 57.2
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.6e-72 278.1 211 68.2
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 4.0e-68 264.2 147 82.3
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 8.8e-68 263.1 449 37.9
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 3.5e-64 251.1 149 80.5
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.8e-52 212.2 127 77.2
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 8.0e-45 186.8 136 65.4
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 1.5e-43 182.6 163 59.5
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 2.0e-40 172.2 118 68.6
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.9e-39 167.9 172 58.1
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.8e-37 161.8 94 80.9
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.8e-36 157.1 113 68.1
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.2e-35 156.4 102 75.5
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 2.1e-32 145.6 88 79.5
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-31 142.5 98 71.4
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.5e-30 138.7 73 94.5
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 5.2e-28 131.0 74 87.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 3.4e-27 128.3 131 58.0
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 7.5e-27 127.1 127 58.3
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-26 125.9 70 87.1
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.4e-25 122.1 108 62.0
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.2e-25 121.7 81 67.9
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.4e-25 120.9 91 70.3
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.2e-24 119.8 85 68.2
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-22 112.5 80 80.0
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 8.4e-18 97.1 100 50.0
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.4e-17 96.3 52 86.5
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.7e-16 92.0 54 79.6
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 6.6e-15 87.4 100 50.0
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 2.4e-12 79.0 226 24.3
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.4e-12 79.0 49 63.3
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 9.0e-12 77.0 160 32.5
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 6.0e-08 64.3 45 68.9
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 5.1e-07 61.2 61 55.7


User provided reference genes

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