Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 1.1e-195 686.4 345 100.0
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 3.4e-168 595.1 345 85.8
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 1.3e-167 593.2 343 86.0
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 8.6e-164 580.5 338 84.9
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.2e-162 576.6 346 84.1
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 8.9e-161 570.5 345 83.8
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 8.9e-161 570.5 345 83.8
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 1.5e-160 569.7 346 83.2
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 4.4e-160 568.2 345 83.8
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 9.9e-160 567.0 345 82.0
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.7e-159 566.2 348 82.5
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 2.2e-159 565.8 345 82.3
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 3.8e-159 565.1 345 81.2
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.1e-158 563.5 345 80.6
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.9e-158 562.8 347 83.0
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.9e-158 562.8 345 81.4
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 5.4e-158 561.2 345 81.4
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 7.1e-158 560.8 345 80.9
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 7.1e-158 560.8 347 81.6
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 1.2e-157 560.1 347 81.3
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.6e-157 559.7 345 80.6
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 2.7e-157 558.9 346 81.2
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.6e-157 558.1 345 80.3
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 4.6e-157 558.1 326 84.7
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 7.8e-157 557.4 345 80.3
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 3.0e-156 555.4 348 81.3
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 8.7e-156 553.9 346 81.5
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.1e-155 553.5 345 80.0
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.1e-155 553.5 345 79.4
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.1e-155 553.5 347 81.0
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.1e-155 553.5 347 82.1
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 4.3e-155 551.6 352 79.8
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 9.6e-155 550.4 355 78.6
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 9.6e-155 550.4 345 79.7
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 1.6e-154 549.7 345 80.3
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 2.8e-154 548.9 353 78.2
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 4.8e-154 548.1 345 79.4
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 6.2e-154 547.7 345 80.3
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 6.2e-154 547.7 350 80.3
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 8.1e-154 547.4 346 80.1
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 8.1e-154 547.4 344 80.2
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.1e-153 547.0 346 80.1
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.1e-153 547.0 345 79.7
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.1e-153 547.0 346 80.1
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.8e-153 546.2 345 78.8
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.4e-153 545.8 332 82.8
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 4.0e-153 545.0 345 78.8
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 4.0e-153 545.0 347 79.8
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 5.3e-153 544.7 348 78.4
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 9.0e-153 543.9 351 77.8
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 1.2e-152 543.5 346 79.5
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.2e-152 543.5 347 79.8
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.2e-152 543.5 347 79.5
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.2e-152 543.5 347 80.7
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.5e-152 543.1 343 79.6
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.0e-152 542.7 343 80.2
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 2.6e-152 542.3 345 79.4
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 7.6e-152 540.8 349 78.5
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 7.6e-152 540.8 348 79.0
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 8.4e-151 537.3 345 77.7
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 2.4e-150 535.8 364 75.8
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 4.2e-150 535.0 347 78.4
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 4.2e-150 535.0 373 75.1
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 4.2e-150 535.0 323 81.7
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 5.4e-150 534.6 335 81.5
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 7.1e-150 534.3 348 77.6
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 1.2e-149 533.5 353 77.3
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 1.2e-149 533.5 352 77.3
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.6e-149 533.1 345 77.1
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 3.5e-149 531.9 348 79.0
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 3.5e-149 531.9 353 77.1
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 4.6e-149 531.6 345 77.7
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 8.7e-148 527.3 352 76.4
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 8.7e-148 527.3 359 75.8
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 1.9e-147 526.2 352 76.1
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 2.5e-147 525.8 346 77.5
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 4.3e-147 525.0 346 77.2
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 4.3e-147 525.0 352 76.1
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.6e-146 523.1 364 75.0
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 2.8e-146 522.3 337 77.4
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 3.6e-146 521.9 345 76.5
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 4.8e-146 521.5 363 75.2
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 5.3e-145 518.1 347 75.2
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 9.0e-145 517.3 345 77.1
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 1.5e-144 516.5 351 74.1
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 3.4e-144 515.4 345 76.5
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 4.5e-144 515.0 345 75.4
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 4.5e-144 515.0 346 76.0
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 5.8e-144 514.6 351 73.8
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.3e-143 513.5 347 77.2
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 1.3e-143 513.5 345 75.1
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 3.8e-143 511.9 345 75.9
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 4.9e-143 511.5 346 74.0
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 6.4e-143 511.1 346 73.4
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 6.4e-143 511.1 346 73.4
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 6.4e-143 511.1 346 73.4
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-142 510.4 346 74.0
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 1.1e-142 510.4 346 74.0
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.1e-142 510.4 353 72.2
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 1.4e-142 510.0 346 74.0
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 2.4e-142 509.2 354 72.3
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 5.5e-142 508.1 355 72.1
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 5.5e-142 508.1 347 74.4
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 9.3e-142 507.3 348 72.1
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 9.3e-142 507.3 348 72.1
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-140 503.4 349 72.2
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 1.3e-140 503.4 348 71.6
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 3.9e-140 501.9 293 85.7
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 3.9e-140 501.9 293 85.7
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 6.7e-140 501.1 366 71.9
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 6.7e-140 501.1 354 71.5
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 2.5e-139 499.2 344 75.9
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.2e-138 494.6 347 75.8
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 3.4e-136 488.8 346 71.4
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 8.4e-135 484.2 337 70.3
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 5.5e-134 481.5 387 66.7
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 2.1e-133 479.6 345 73.0
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.7e-133 479.2 349 70.5
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.8e-132 476.5 303 77.6
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 1.8e-132 476.5 349 69.3
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 2.3e-132 476.1 345 72.2
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 9.6e-131 470.7 337 72.1
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 8.2e-130 467.6 345 69.9
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 1.4e-129 466.8 322 72.0
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 1.4e-129 466.8 349 67.6
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 1.2e-128 463.8 348 68.4
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 3.4e-128 462.2 350 72.3
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 2.2e-127 459.5 323 68.7
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 2.9e-127 459.1 347 68.3
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 2.9e-127 459.1 347 68.3
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 5.0e-127 458.4 333 68.5
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 5.1e-124 448.4 326 68.1
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.1e-118 430.6 315 66.3
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 2.2e-114 416.4 275 75.3
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 9.1e-113 411.0 318 62.6
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.3e-111 407.1 322 62.7
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 1.4e-110 403.7 337 60.2
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 7.4e-107 391.3 231 82.7
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.2e-98 363.2 229 78.2
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-94 350.9 255 68.6
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 1.5e-91 340.5 209 79.4
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.7e-85 318.9 298 55.4
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 2.3e-79 300.1 248 63.7
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 4.3e-78 295.8 219 70.8
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.4e-76 290.8 185 83.2
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.5e-67 260.8 186 66.1
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.5e-67 260.8 186 66.1
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 9.9e-59 231.5 165 67.9
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 1.2e-56 224.6 123 89.4
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 4.6e-56 222.6 119 89.1
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 5.1e-55 219.2 131 80.2
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 8.1e-53 211.8 122 80.3
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 4.7e-45 186.0 164 60.4
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 1.1e-44 184.9 164 61.6
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 2.9e-42 176.8 164 60.4
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.3e-39 167.2 127 64.6
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 2.1e-32 144.1 119 68.1
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 2.1e-29 134.0 92 76.1
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 6.9e-28 129.0 70 90.0
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 3.8e-26 123.2 164 44.5
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.1e-24 117.5 92 67.4
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 4.0e-20 103.2 105 54.3
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 7.6e-19 99.0 233 34.3
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.3e-18 98.2 118 44.1
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 6.7e-15 85.9 78 55.1
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 9.7e-14 82.0 145 40.7
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 9.3e-09 65.5 51 68.6
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 1.2e-08 65.1 66 56.1
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 7.9e-08 62.4 36 77.8


User provided reference genes

Program Settings