Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 4.0e-196 688.0 356 100.0
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 7.0e-185 650.6 356 95.5
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 9.0e-132 474.2 357 72.5
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 1.5e-131 473.4 358 72.1
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 2.9e-130 469.2 320 76.6
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 1.9e-129 466.5 346 70.8
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 3.2e-129 465.7 347 71.5
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.2e-128 463.8 359 71.0
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 1.6e-128 463.4 345 70.7
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 2.1e-128 463.0 299 78.9
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 3.5e-128 462.2 341 72.7
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.0e-127 460.7 371 68.7
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.8e-127 459.9 356 70.8
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.3e-127 459.5 356 69.7
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 2.3e-127 459.5 346 72.0
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 2.3e-127 459.5 349 71.3
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 3.0e-127 459.1 308 77.3
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 5.1e-127 458.4 332 73.2
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 5.1e-127 458.4 331 72.5
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 8.7e-127 457.6 351 71.2
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 1.1e-126 457.2 299 78.3
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 3.3e-126 455.7 291 82.1
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 5.7e-126 454.9 366 68.3
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 5.7e-126 454.9 301 78.4
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 7.4e-126 454.5 290 81.4
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.6e-125 453.4 336 72.3
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 6.2e-125 451.4 364 67.9
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 8.2e-125 451.1 365 67.9
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 1.1e-124 450.7 321 74.8
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.1e-124 450.7 336 71.7
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 1.4e-124 450.3 290 80.0
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 1.4e-124 450.3 290 81.0
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 2.4e-124 449.5 298 77.5
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 5.3e-124 448.4 361 69.0
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 9.0e-124 447.6 288 80.6
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 9.0e-124 447.6 288 80.2
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.5e-123 446.8 292 77.4
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 2.6e-123 446.0 290 80.0
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 3.4e-123 445.7 290 80.0
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 4.5e-123 445.3 344 70.1
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 5.8e-123 444.9 290 79.3
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 2.9e-122 442.6 327 73.4
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 5.0e-122 441.8 356 69.7
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 8.4e-122 441.0 307 75.2
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 3.2e-121 439.1 331 71.6
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 7.2e-121 438.0 308 76.9
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.2e-120 437.2 306 76.1
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.6e-120 436.8 295 76.9
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 1.6e-120 436.8 294 76.5
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 2.7e-120 436.0 306 75.8
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 3.5e-120 435.6 296 77.7
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 4.6e-120 435.3 316 73.1
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 2.3e-119 433.0 304 73.7
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 3.9e-119 432.2 310 74.2
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 3.9e-119 432.2 337 69.7
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 6.7e-119 431.4 312 72.4
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 8.7e-119 431.0 312 72.1
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.1e-118 430.6 353 67.1
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 1.1e-118 430.6 290 77.2
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 2.5e-118 429.5 357 66.1
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 1.3e-117 427.2 313 74.1
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 2.2e-117 426.4 305 72.5
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 2.2e-117 426.4 293 74.7
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.2e-117 426.4 312 72.1
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-116 424.1 322 70.5
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 1.4e-116 423.7 306 71.9
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 2.4e-116 422.9 304 72.0
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 5.3e-116 421.8 293 73.7
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 1.2e-115 420.6 320 70.0
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 1.5e-115 420.2 306 72.5
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 1.5e-115 420.2 306 72.5
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 1.5e-115 420.2 322 69.3
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 2.6e-115 419.5 294 74.8
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 7.7e-115 417.9 294 74.5
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 7.7e-115 417.9 294 74.5
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 1.7e-114 416.8 294 74.1
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 8.5e-114 414.5 378 61.6
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.1e-113 414.1 260 81.9
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 1.4e-113 413.7 304 71.1
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 1.0e-111 407.5 348 64.7
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 3.0e-111 406.0 329 67.2
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 1.1e-110 404.1 242 86.4
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 3.3e-110 402.5 268 78.0
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 4.3e-110 402.1 341 64.5
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.7e-109 400.2 271 76.0
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 4.8e-109 398.7 297 70.7
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 6.3e-109 398.3 300 70.3
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.1e-108 397.5 240 85.8
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 3.1e-108 396.0 296 71.6
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 6.9e-108 394.8 296 71.6
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 3.4e-107 392.5 300 70.0
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 1.3e-106 390.6 329 65.7
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 1.7e-106 390.2 291 70.8
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 2.2e-106 389.8 288 70.1
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 5.0e-106 388.7 290 69.0
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 6.5e-106 388.3 344 63.1
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 8.5e-106 387.9 320 64.7
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 8.5e-106 387.9 359 61.3
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 3.2e-105 386.0 364 59.1
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 4.2e-105 385.6 265 75.1
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 2.1e-104 383.3 352 59.9
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 6.1e-104 381.7 305 67.2
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 8.8e-103 377.9 328 62.8
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 1.1e-102 377.5 289 67.5
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 1.1e-102 377.5 260 75.0
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 4.4e-102 375.6 326 62.0
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 5.7e-102 375.2 288 69.1
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 9.7e-102 374.4 335 60.9
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 1.3e-101 374.0 335 60.9
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 6.3e-101 371.7 335 60.6
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 8.2e-101 371.3 289 68.2
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 8.2e-101 371.3 296 65.5
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 5.3e-100 368.6 262 71.8
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.6e-99 367.1 335 60.6
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 4.2e-97 359.0 347 60.2
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 9.7e-94 347.8 248 73.0
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 2.8e-93 346.3 354 57.6
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 1.7e-90 337.0 306 61.8
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 8.5e-90 334.7 335 56.4
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.9e-89 333.6 252 67.5
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 1.3e-85 320.9 252 64.3
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 2.2e-82 310.1 282 62.1
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 1.5e-78 297.4 177 87.6
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 9.5e-73 278.1 252 57.5
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 8.3e-69 265.0 207 68.6
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 3.0e-66 256.5 191 73.3
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 6.8e-63 245.4 201 67.2
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 7.8e-51 205.3 157 70.7
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 5.1e-42 176.0 117 72.6
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 4.7e-40 169.5 103 82.5
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 2.5e-33 147.1 103 73.8
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 2.5e-33 147.1 103 73.8
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.2e-27 128.3 102 61.8
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.8e-21 106.7 60 95.0
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 4.9e-21 106.3 63 85.7
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 6.7e-18 95.9 192 29.7
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 3.3e-09 67.0 40 70.0


User provided reference genes

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