Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04622 Striga asiatica HOM05D002884 ORTHO05D003178 3.7e-143 511.5 262 100.0
SGA_v2.0_scaffold144G35971 Striga asiatica HOM05D002884 ORTHO05D003178 2.8e-82 309.3 200 83.0
SGA_v2.0_scaffold385G50454 Striga asiatica HOM05D002884 ORTHO05D003178 3.3e-54 216.1 191 64.9
MSTRG.12015 Avicennia marina HOM05D002884 ORTHO05D003178 7.3e-30 135.2 223 43.9
Oeu031597.1 Olea europaea HOM05D002884 ORTHO05D003178 1.8e-28 130.6 207 46.4
Oeu011663.1 Olea europaea HOM05D002884 ORTHO05D003178 2.6e-27 126.7 242 42.1
Nitab4.5_0002234g0060 Nicotiana tabacum HOM05D002884 ORTHO05D003178 3.5e-24 116.3 224 37.9
Dinv39004 Davidia involucrata HOM05D002884 ORTHO05D003178 2.3e-23 113.6 204 42.2
Oeu059065.2 Olea europaea HOM05D002884 ORTHO05D003178 2.3e-23 113.6 238 37.8
Cpa.g.sc74.81 Carica papaya HOM05D002884 ORTHO05D003178 3.3e-22 109.8 206 44.2
Cc08_g14060 Coffea canephora HOM05D002884 ORTHO05D003178 9.6e-22 108.2 215 41.9
Hma1.2p1_0514F.1_g170040 Hydrangea macrophylla HOM05D002884 ORTHO05D003178 1.6e-21 107.5 218 39.9
TAR629G1766 Trochodendron aralioides HOM05D002884 ORTHO05D003178 2.1e-21 107.1 222 39.6
Cfa012110 Carpinus fangiana HOM05D002884 ORTHO05D003178 2.8e-21 106.7 204 41.2
Nitab4.5_0002853g0040 Nicotiana tabacum HOM05D002884 ORTHO05D003178 2.8e-21 106.7 224 37.1
TAR629G3349 Trochodendron aralioides HOM05D002884 ORTHO05D003178 3.6e-21 106.3 222 39.6
Haze_08941 Corylus avellana HOM05D002884 ORTHO05D003178 4.7e-21 105.9 204 41.2
CSS0002116 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 1.1e-20 104.8 206 39.8
Lj8A238T60 Lonicera japonica HOM05D002884 ORTHO05D003178 2.4e-20 103.6 199 41.7
unitig_26.g9695 Utricularia gibba HOM05D002884 ORTHO05D003178 2.4e-20 103.6 193 39.9
CiPaw.11G140600 Carya illinoinensis HOM05D002884 ORTHO05D003178 4.0e-20 102.8 205 42.0
GSVIVG01019815001 Vitis vinifera HOM05D002884 ORTHO05D003178 4.0e-20 102.8 244 38.9
Prupe.5G091800 Prunus persica HOM05D002884 ORTHO05D003178 8.9e-20 101.7 212 40.1
Actinidia14527 Actinidia chinensis HOM05D002884 ORTHO05D003178 1.2e-19 101.3 212 40.1
CAN.G981.24 Capsicum annuum HOM05D002884 ORTHO05D003178 2.0e-19 100.5 211 37.4
Oeu048784.1 Olea europaea HOM05D002884 ORTHO05D003178 3.4e-19 99.8 188 44.7
QL12p017410 Quercus lobata HOM05D002884 ORTHO05D003178 7.6e-19 98.6 240 39.6
TAR375G0217 Trochodendron aralioides HOM05D002884 ORTHO05D003178 9.9e-19 98.2 221 38.9
Sabra03G0086200 Salix brachista HOM05D002884 ORTHO05D003178 1.7e-18 97.4 199 40.7
Nn6g34230 Nelumbo nucifera HOM05D002884 ORTHO05D003178 2.2e-18 97.1 239 35.6
HanXRQChr13g0416781 Helianthus annuus HOM05D002884 ORTHO05D003178 2.9e-18 96.7 208 38.5
MD04G1066700 Malus domestica HOM05D002884 ORTHO05D003178 2.9e-18 96.7 211 42.2
SalBow6G0746 Salvia bowleyana HOM05D002884 ORTHO05D003178 2.9e-18 96.7 192 37.5
Phvul.003G212000 Phaseolus vulgaris HOM05D002884 ORTHO05D003178 3.8e-18 96.3 203 38.4
Ciclev10019482m.g Citrus clementina HOM05D002884 ORTHO05D003178 4.9e-18 95.9 194 42.3
Lalb_Chr09g0321151 Lupinus albus HOM05D002884 ORTHO05D003178 6.4e-18 95.5 179 39.7
DCAR_004672 Daucus carota HOM05D002884 ORTHO05D003178 8.4e-18 95.1 208 38.5
TAR636G2592 Trochodendron aralioides HOM05D002884 ORTHO05D003178 8.4e-18 95.1 234 38.5
Glyma.05G049200 Glycine max HOM05D002884 ORTHO05D003178 1.1e-17 94.7 201 38.8
MBI12_g29747_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 1.1e-17 94.7 243 36.6
VMungo1215G1054 Vigna mungo HOM05D002884 ORTHO05D003178 1.9e-17 94.0 204 38.7
PSO478G0346 Papaver somniferum HOM05D002884 ORTHO05D003178 2.4e-17 93.6 210 37.1
CANSAT21G2344 Cannabis sativa HOM05D002884 ORTHO05D003178 3.2e-17 93.2 206 38.8
PSO782G3187 Papaver somniferum HOM05D002884 ORTHO05D003178 3.2e-17 93.2 194 39.2
Duzib068G1440 Durio zibethinus HOM05D002884 ORTHO05D003178 4.2e-17 92.8 198 42.9
Lj2g0016961 Lotus japonicus HOM05D002884 ORTHO05D003178 4.2e-17 92.8 206 34.5
MD06G1073600 Malus domestica HOM05D002884 ORTHO05D003178 4.2e-17 92.8 211 39.3
vmacro00201 Vaccinium macrocarpon HOM05D002884 ORTHO05D003178 7.1e-17 92.0 210 39.5
PGSC0003DMG400003048 Solanum tuberosum HOM05D002884 ORTHO05D003178 2.1e-16 90.5 214 35.0
Solyc08g080410.3 Solanum lycopersicum HOM05D002884 ORTHO05D003178 2.7e-16 90.1 214 37.4
Thecc.03G272100 Theobroma cacao HOM05D002884 ORTHO05D003178 2.7e-16 90.1 209 37.8
Aqoxy7G00426 Aquilegia oxysepala HOM05D002884 ORTHO05D003178 3.5e-16 89.7 207 37.7
Sopen08g028740 Solanum pennellii HOM05D002884 ORTHO05D003178 3.5e-16 89.7 214 36.9
Potri.003G122300 Populus trichocarpa HOM05D002884 ORTHO05D003178 4.6e-16 89.4 193 39.9
COL.COLO4_05264 Corchorus olitorius HOM05D002884 ORTHO05D003178 6.0e-16 89.0 213 39.4
FvH4_5g01560 Fragaria vesca HOM05D002884 ORTHO05D003178 6.0e-16 89.0 207 39.1
FAN08G2255 Fragaria x ananassa HOM05D002884 ORTHO05D003178 6.0e-16 89.0 232 35.3
Lalb_Chr16g0377211 Lupinus albus HOM05D002884 ORTHO05D003178 6.0e-16 89.0 230 35.7
Duzib205G1004 Durio zibethinus HOM05D002884 ORTHO05D003178 1.0e-15 88.2 189 38.6
CSS0004594 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 1.3e-15 87.8 194 40.7
FAN08G3344 Fragaria x ananassa HOM05D002884 ORTHO05D003178 1.3e-15 87.8 207 39.6
FAN18G2326 Fragaria x ananassa HOM05D002884 ORTHO05D003178 1.3e-15 87.8 207 39.6
Glyma.17G131100 Glycine max HOM05D002884 ORTHO05D003178 1.3e-15 87.8 199 38.7
Potri.001G109500 Populus trichocarpa HOM05D002884 ORTHO05D003178 1.3e-15 87.8 200 41.0
Hund11525 Selenicereus undatus HOM05D002884 ORTHO05D003178 1.3e-15 87.8 206 36.4
Gorai.008G244000 Gossypium raimondii HOM05D002884 ORTHO05D003178 1.7e-15 87.4 213 39.0
DCAR_006758 Daucus carota HOM05D002884 ORTHO05D003178 2.3e-15 87.0 197 40.1
Rhsim11G0003600 Rhododendron simsii HOM05D002884 ORTHO05D003178 5.1e-15 85.9 207 36.7
AUR62017287 Chenopodium quinoa HOM05D002884 ORTHO05D003178 6.6e-15 85.5 204 36.3
arahy.Tifrunner.gnm1.ann1.00WUVK Arachis hypogaea HOM05D002884 ORTHO05D003178 8.7e-15 85.1 197 37.6
arahy.Tifrunner.gnm1.ann1.2WQF85 Arachis hypogaea HOM05D002884 ORTHO05D003178 8.7e-15 85.1 197 37.6
Ca_20250_v3 Cicer arietinum L. HOM05D002884 ORTHO05D003178 8.7e-15 85.1 192 36.5
Sabra01G0082800 Salix brachista HOM05D002884 ORTHO05D003178 1.9e-14 84.0 212 39.2
Gohir.D12G228000 Gossypium hirsutum HOM05D002884 ORTHO05D003178 2.5e-14 83.6 213 38.0
Lsat_1_v5_gn_6_87540 Lactuca sativa HOM05D002884 ORTHO05D003178 2.5e-14 83.6 210 38.6
Hund11524 Selenicereus undatus HOM05D002884 ORTHO05D003178 2.5e-14 83.6 202 38.6
AUR62010645 Chenopodium quinoa HOM05D002884 ORTHO05D003178 7.3e-14 82.0 198 34.8
RcHm_v2.0_Chr7g0199121 Rosa chinensis HOM05D002884 ORTHO05D003178 9.6e-14 81.6 208 36.5
FAN13G0317 Fragaria x ananassa HOM05D002884 ORTHO05D003178 1.3e-13 81.3 232 34.9
TWI81G0934 Tripterygium wilfordii HOM05D002884 ORTHO05D003178 1.6e-13 80.9 201 37.3
Migut.E01291 Erythranthe guttata HOM05D002884 ORTHO05D003178 3.6e-13 79.7 123 46.3
FAN04G2772 Fragaria x ananassa HOM05D002884 ORTHO05D003178 6.2e-13 79.0 232 34.9
HPP92_022611 Vanilla planifolia HOM05D002884 ORTHO05D003178 8.1e-13 78.6 178 37.1
CiPaw.12G097600 Carya illinoinensis HOM05D002884 ORTHO05D003178 1.1e-12 78.2 204 37.3
Gohir.A12G225400 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.8e-12 77.4 198 38.9
TWI60G1702 Tripterygium wilfordii HOM05D002884 ORTHO05D003178 1.8e-12 77.4 191 37.7
EL10Ac5g12735 Beta vulgaris HOM05D002884 ORTHO05D003178 2.4e-12 77.0 198 35.9
Eucgr.E00535 Eucalyptus grandis HOM05D002884 ORTHO05D003178 2.4e-12 77.0 194 35.6
A09p27380 Brassica napus HOM05D002884 ORTHO05D003178 3.1e-12 76.6 226 32.7
BraA09t38307Z Brassica rapa HOM05D002884 ORTHO05D003178 6.9e-12 75.5 226 32.7
Nn1g01376 Nelumbo nucifera HOM05D002884 ORTHO05D003178 6.9e-12 75.5 213 35.2
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 9.0e-12 75.1 238 29.8
CARHR254610 Cardamine hirsuta HOM05D002884 ORTHO05D003178 9.0e-12 75.1 247 33.2
BcaNung06111 Brassica carinata HOM05D002884 ORTHO05D003178 1.2e-11 74.7 226 32.7
C09p34700 Brassica napus HOM05D002884 ORTHO05D003178 1.2e-11 74.7 226 32.7
BolC9t56316H Brassica oleracea HOM05D002884 ORTHO05D003178 1.2e-11 74.7 226 32.7
MBI04_g00304_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 1.2e-11 74.7 216 34.3
Carub.0006s3083 Capsella rubella HOM05D002884 ORTHO05D003178 1.5e-11 74.3 211 31.3
PGR042G2076 Punica granatum HOM05D002884 ORTHO05D003178 1.5e-11 74.3 200 35.5
Lalb_Chr16g0389741 Lupinus albus HOM05D002884 ORTHO05D003178 2.0e-11 73.9 192 33.9
Dinv37684 Davidia involucrata HOM05D002884 ORTHO05D003178 3.4e-11 73.2 130 47.7
BcaB01g01676 Brassica carinata HOM05D002884 ORTHO05D003178 5.8e-11 72.4 210 32.4
Os08g0546400 Oryza sativa ssp. japonica HOM05D002884 ORTHO05D003178 5.8e-11 72.4 149 36.9
Peaxi162Scf00714g00057 Petunia axillaris HOM05D002884 ORTHO05D003178 5.8e-11 72.4 180 34.4
Sp6g05690 Schrenkiella parvula HOM05D002884 ORTHO05D003178 5.8e-11 72.4 212 34.4
TPR.G19228 Trifolium pratense HOM05D002884 ORTHO05D003178 5.8e-11 72.4 175 37.1
AL6G46330 Arabidopsis lyrata HOM05D002884 ORTHO05D003178 1.3e-10 71.2 214 30.4
Atru.chr9.1548 Acer truncatum HOM05D002884 ORTHO05D003178 1.7e-10 70.9 146 41.8
AT4G11740 Arabidopsis thaliana HOM05D002884 ORTHO05D003178 1.7e-10 70.9 212 31.6
Hma1.2p1_0371F.1_g138100 Hydrangea macrophylla HOM05D002884 ORTHO05D003178 1.7e-10 70.9 246 32.5
ECA240G2117 Erigeron canadensis HOM05D002884 ORTHO05D003178 2.9e-10 70.1 181 37.6
Gohir.A09G193001 Gossypium hirsutum HOM05D002884 ORTHO05D003178 3.8e-10 69.7 208 35.1
Ah.12g057580 Amaranthus hybridus HOM05D002884 ORTHO05D003178 4.9e-10 69.3 202 33.7
SHI09624 Sapria himalayana HOM05D002884 ORTHO05D003178 4.9e-10 69.3 164 38.4
Gorai.006G210000 Gossypium raimondii HOM05D002884 ORTHO05D003178 8.4e-10 68.6 208 34.1
Thhalv10028549m.g Eutrema salsugineum HOM05D002884 ORTHO05D003178 1.1e-09 68.2 205 29.8
Sed0001920 Sechium edule HOM05D002884 ORTHO05D003178 1.4e-09 67.8 224 32.6
Gohir.D09G187200 Gossypium hirsutum HOM05D002884 ORTHO05D003178 2.4e-09 67.0 207 33.8
Medtr4g102810 Medicago truncatula HOM05D002884 ORTHO05D003178 3.2e-09 66.6 187 32.6
THA.LOC104806375 Tarenaya hassleriana HOM05D002884 ORTHO05D003178 5.4e-09 65.9 192 32.8
THA.LOC104814310 Tarenaya hassleriana HOM05D002884 ORTHO05D003178 7.1e-09 65.5 193 33.2
ECA246G0929 Erigeron canadensis HOM05D003547 ORTHO05D004236 2.7e-08 63.5 227 28.6
Sc01g0008750 Simmondsia chinensis HOM05D002884 ORTHO05D003178 2.7e-08 63.5 193 32.1
Zm00001eb198600 Zea mays HOM05D002884 ORTHO05D003178 3.5e-08 63.2 138 35.5
CsaV3_3G003750 Cucumis sativus L. HOM05D002884 ORTHO05D003178 4.6e-08 62.8 205 30.7
Psat4g066960 Pisum sativum HOM05D002884 ORTHO05D003178 7.8e-08 62.0 170 34.1
Lj2A193T55 Lonicera japonica HOM05D002884 ORTHO05D003178 1.3e-07 61.2 204 31.9
Haze_15214 Corylus avellana HOM05D002884 ORTHO05D003178 3.0e-07 60.1 131 37.4
MELO3C014057.2 Cucumis melo HOM05D002884 ORTHO05D003178 3.0e-07 60.1 205 30.2
Migut.A00926 Erythranthe guttata HOM05D002884 ORTHO05D003178 1.1e-06 58.2 125 41.6
Sc22g0000260 Simmondsia chinensis HOM05D002884 ORTHO05D003178 1.5e-06 57.8 86 41.9
Actinidia02037 Actinidia chinensis HOM05D002884 ORTHO05D003178 1.9e-06 57.4 107 41.1
AT4G23040 Arabidopsis thaliana HOM05D002884 ORTHO05D003178 1.9e-06 57.4 158 32.3
Lsat_1_v5_gn_6_49340 Lactuca sativa HOM05D002884 ORTHO05D003178 3.3e-06 56.6 144 36.8
AL7G30460 Arabidopsis lyrata HOM05D002884 ORTHO05D003178 9.6e-06 55.1 157 32.5


User provided reference genes

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