Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 6.0e-269 930.2 465 100.0
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 4.9e-178 628.2 563 61.3
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 6.0e-176 621.3 571 60.4
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 1.4e-172 610.1 581 59.4
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 6.8e-172 607.8 546 60.8
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 3.4e-171 605.5 556 59.5
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 1.1e-169 600.5 573 56.7
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 2.1e-168 596.3 562 58.0
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 7.8e-168 594.3 584 56.2
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 1.7e-167 593.2 556 58.6
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 3.0e-167 592.4 550 58.5
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 2.8e-165 585.9 559 57.6
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 8.1e-165 584.3 559 57.4
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 8.1e-165 584.3 547 58.5
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 1.4e-164 583.6 566 56.9
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 1.8e-164 583.2 565 56.6
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 5.2e-164 581.6 573 56.9
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 2.0e-163 579.7 562 56.8
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 2.0e-163 579.7 560 57.7
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 2.6e-163 579.3 560 56.8
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 3.4e-163 578.9 565 55.6
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 3.4e-163 578.9 554 57.4
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 5.8e-163 578.2 562 56.6
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 9.9e-163 577.4 558 57.2
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 3.7e-162 575.5 558 56.6
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 4.9e-162 575.1 569 56.6
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 6.4e-162 574.7 565 57.3
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 6.4e-162 574.7 564 56.7
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.9e-161 573.2 564 56.7
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 2.4e-161 572.8 560 56.2
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 2.4e-161 572.8 571 55.5
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.2e-161 572.4 563 56.7
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 7.1e-161 571.2 550 56.2
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 1.2e-160 570.5 569 56.4
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 2.1e-160 569.7 559 56.9
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 2.7e-160 569.3 566 55.7
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 2.7e-160 569.3 551 57.9
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 3.5e-160 568.9 567 55.2
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 4.6e-160 568.5 565 55.4
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 4.6e-160 568.5 552 56.9
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.0e-159 567.4 564 55.9
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 1.0e-159 567.4 560 56.2
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 1.3e-159 567.0 560 55.4
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 3.0e-159 565.8 551 56.6
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 3.9e-159 565.5 556 56.8
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 6.6e-159 564.7 560 55.7
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 1.1e-158 563.9 539 57.3
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 1.5e-158 563.5 561 55.8
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 1.9e-158 563.1 554 56.0
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 1.9e-158 563.1 561 55.4
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 2.5e-158 562.8 559 56.4
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 2.5e-158 562.8 554 56.5
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 3.3e-158 562.4 560 56.1
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 7.3e-158 561.2 550 56.0
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.2e-157 560.5 564 55.5
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 1.6e-157 560.1 560 56.1
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 2.1e-157 559.7 527 58.8
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 2.8e-157 559.3 556 56.5
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 2.8e-157 559.3 623 52.5
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 4.7e-157 558.5 565 54.2
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 4.7e-157 558.5 565 55.2
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 8.1e-157 557.8 589 54.3
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.1e-156 557.4 567 54.0
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 1.4e-156 557.0 559 55.3
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 1.4e-156 557.0 564 55.9
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 1.4e-156 557.0 566 55.1
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 6.8e-156 554.7 562 55.5
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 8.9e-156 554.3 575 54.4
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 8.9e-156 554.3 561 55.3
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 8.9e-156 554.3 566 53.9
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 1.2e-155 553.9 558 55.6
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 2.0e-155 553.1 579 53.5
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 2.6e-155 552.7 555 55.5
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 5.8e-155 551.6 564 55.7
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 7.6e-155 551.2 562 55.0
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 1.7e-154 550.1 559 55.1
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 2.2e-154 549.7 564 55.0
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 3.8e-154 548.9 558 55.7
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 4.9e-154 548.5 570 54.0
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.1e-153 547.4 546 55.7
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 1.4e-153 547.0 565 54.9
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 4.2e-153 545.4 570 53.9
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 7.1e-153 544.7 543 56.2
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 1.6e-152 543.5 558 54.1
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 5.1e-151 538.5 575 52.9
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 8.7e-151 537.7 558 54.8
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 1.4e-148 530.4 550 53.6
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 2.4e-148 529.6 556 52.9
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 6.9e-148 528.1 559 53.1
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 1.5e-147 526.9 562 52.7
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 1.3e-146 523.9 564 53.9
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 2.9e-146 522.7 541 55.3
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 5.4e-145 518.5 525 54.5
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 2.7e-144 516.2 536 54.3
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 2.3e-143 513.1 544 53.9
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 1.1e-142 510.8 535 54.6
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 1.2e-139 500.7 542 52.6
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 2.2e-138 496.5 551 51.5
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 4.9e-138 495.4 566 50.2
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 1.6e-136 490.3 547 52.1
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 3.3e-134 482.6 489 54.6
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 5.6e-134 481.9 495 54.3
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 7.4e-134 481.5 562 49.6
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 4.0e-132 475.7 523 52.2
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 4.0e-132 475.7 490 53.7
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 1.6e-125 453.8 506 51.6
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 1.5e-123 447.2 501 52.7
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 5.9e-123 445.3 519 48.6
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 6.5e-122 441.8 520 47.1
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 5.9e-115 418.7 547 47.7
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 9.1e-108 394.8 417 54.2
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 7.2e-105 385.2 395 55.7
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 6.1e-104 382.1 468 46.8
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 3.0e-103 379.8 448 49.8
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 3.7e-101 372.9 351 58.1
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 7.0e-100 368.6 421 50.4
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 5.9e-99 365.5 406 52.2
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 3.2e-97 359.8 451 46.3
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 4.8e-93 345.9 389 52.2
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 6.3e-93 345.5 474 47.0
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 1.0e-90 338.2 352 52.6
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 1.7e-85 320.9 510 38.4
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 1.1e-84 318.2 527 38.1
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 7.7e-83 312.0 299 56.5
vmacro04977 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 9.8e-78 295.0 305 54.1
Cc00_g05720 Coffea canephora HOM05D004351 ORTHO05D005196 1.8e-76 290.8 291 53.3
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 3.6e-72 276.6 177 76.3
PSO211G0001 Papaver somniferum HOM05D004351 ORTHO05D005196 4.0e-71 273.1 280 53.9
PSO384G0035 Papaver somniferum HOM05D004351 ORTHO05D005196 4.0e-71 273.1 280 53.9
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 1.2e-70 271.6 411 43.3
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 4.9e-69 266.2 378 46.3
Psat0s4007g0120 Pisum sativum HOM05D004351 ORTHO05D005196 2.7e-67 260.4 165 74.5
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 2.7e-67 260.4 166 74.1
LjContig00564g0001423 Lotus japonicus HOM05D004351 ORTHO05D005196 4.3e-65 253.1 184 68.5
Glyma.08G177502 Glycine max HOM05D004351 ORTHO05D005196 1.0e-63 248.4 175 69.1
Rhsim13G0210400 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.7e-61 241.1 203 62.1
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 2.0e-59 234.2 522 33.1
Cc00_g05710 Coffea canephora HOM05D004351 ORTHO05D005196 2.7e-59 233.8 197 60.9
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 1.1e-57 228.4 489 30.7
Cpa.g.sc34.179 Carica papaya HOM05D004351 ORTHO05D005196 1.2e-56 224.9 127 81.9
Cc00_g05730 Coffea canephora HOM05D004351 ORTHO05D005196 8.3e-53 212.2 127 78.7
CANSAT54G0522 Cannabis sativa HOM05D004351 ORTHO05D005196 2.1e-48 197.6 129 69.8
Sc09g0005690 Simmondsia chinensis HOM05D004351 ORTHO05D005196 4.7e-48 196.4 352 40.6
Psat6g063440 Pisum sativum HOM05D004351 ORTHO05D005196 3.2e-44 183.7 200 52.0
Haze_26934 Corylus avellana HOM05D004351 ORTHO05D005196 2.3e-42 177.6 510 30.0
vmacro04976 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 5.6e-41 172.9 94 85.1
CSS0045717 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 1.4e-39 168.3 115 71.3
MELO3C031085.2 Cucumis melo HOM05D004351 ORTHO05D005196 2.4e-36 157.5 166 50.6
CBR_g36941 Chara braunii HOM05D004351 ORTHO05D005196 3.5e-35 153.7 140 56.4
CBR_g36942 Chara braunii HOM05D000019 ORTHO05D000002 7.1e-28 129.4 100 67.0
Psat2g075720 Pisum sativum HOM05D000058 ORTHO05D002699 4.8e-24 116.7 68 77.9
Psat6g063400 Pisum sativum HOM05D013666 ORTHO05D015141 1.4e-23 115.2 74 73.0
Psat2g075680 Pisum sativum HOM05D004351 ORTHO05D005196 1.3e-18 98.6 60 73.3
TAR636G1014 Trochodendron aralioides HOM05D004351 ORTHO05D005196 1.9e-17 94.7 85 60.0
VMungo0540G1052 Vigna mungo HOM05D004351 ORTHO05D005196 8.1e-16 89.4 151 40.4
arahy.Tifrunner.gnm1.ann1.FI1QHS Arachis hypogaea HOM05D004351 ORTHO05D005196 5.8e-14 83.2 77 61.0
Cc00_g23240 Coffea canephora HOM05D004351 ORTHO05D005196 4.9e-13 80.1 80 53.8
MBI13_g09228_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 1.9e-12 78.2 82 56.1
Oeu038112.1 Olea europaea HOM05D004351 ORTHO05D005196 9.3e-12 75.9 42 88.1
MBI13_g08984_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 1.8e-10 71.6 76 55.3
TAR636G0959 Trochodendron aralioides HOM05D004351 ORTHO05D005196 3.3e-09 67.4 90 47.8


User provided reference genes

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