Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 6.1e-95 350.9 188 100.0
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 7.0e-67 257.7 188 75.0
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 1.8e-62 243.0 192 70.8
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.3e-60 236.9 192 71.4
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.6e-58 229.9 190 67.9
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 2.7e-58 229.2 189 67.7
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 5.9e-58 228.0 188 67.6
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 5.9e-58 228.0 188 67.6
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 1.3e-57 226.9 200 65.5
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 2.9e-57 225.7 189 68.8
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 5.0e-57 224.9 190 66.8
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 1.5e-56 223.4 188 66.5
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 1.5e-56 223.4 187 64.7
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 4.3e-56 221.9 197 65.5
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 4.3e-56 221.9 201 65.7
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 2.1e-55 219.5 191 66.0
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 2.1e-55 219.5 188 65.4
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.8e-55 219.2 195 66.2
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 2.8e-55 219.2 190 63.7
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 3.6e-55 218.8 196 64.8
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 4.7e-55 218.4 207 62.8
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 6.1e-55 218.0 191 66.0
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 6.1e-55 218.0 193 68.4
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 8.0e-55 217.6 207 62.8
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 8.0e-55 217.6 207 63.8
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 8.0e-55 217.6 201 65.2
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 1.4e-54 216.9 209 63.6
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.4e-54 216.9 199 66.8
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 1.8e-54 216.5 203 64.5
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 2.3e-54 216.1 187 66.3
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.3e-54 216.1 195 65.1
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.3e-54 216.1 195 65.1
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.3e-54 216.1 195 65.1
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.0e-54 215.7 201 63.7
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 3.0e-54 215.7 191 64.9
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 3.0e-54 215.7 209 61.2
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 3.0e-54 215.7 178 68.5
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 4.0e-54 215.3 199 66.8
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.0e-54 215.3 199 66.8
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 5.2e-54 214.9 209 61.2
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 5.2e-54 214.9 190 65.8
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 5.2e-54 214.9 194 64.9
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 5.2e-54 214.9 199 65.8
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 8.9e-54 214.2 207 61.4
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.2e-53 213.8 190 65.8
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.2e-53 213.8 209 60.8
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 1.2e-53 213.8 208 63.0
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.5e-53 213.4 200 67.0
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 2.6e-53 212.6 211 61.6
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 4.4e-53 211.8 198 62.6
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 7.5e-53 211.1 204 62.7
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 9.8e-53 210.7 208 60.6
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 9.8e-53 210.7 200 60.5
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 9.8e-53 210.7 192 64.6
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 9.8e-53 210.7 189 64.0
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.7e-52 209.9 207 60.4
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 2.9e-52 209.1 144 71.5
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 3.7e-52 208.8 164 71.3
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 3.7e-52 208.8 201 61.7
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 4.9e-52 208.4 208 63.9
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 4.9e-52 208.4 165 66.1
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 4.9e-52 208.4 200 61.0
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 8.3e-52 207.6 165 66.7
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 1.4e-51 206.8 191 60.2
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.4e-51 206.8 206 63.1
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 1.4e-51 206.8 200 62.0
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.4e-51 206.1 198 60.6
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 3.2e-51 205.7 202 62.4
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 4.1e-51 205.3 197 61.4
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 4.1e-51 205.3 202 61.4
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 4.1e-51 205.3 194 61.3
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 5.4e-51 204.9 201 59.2
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 5.4e-51 204.9 199 60.8
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 7.0e-51 204.5 201 61.7
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 7.0e-51 204.5 205 60.5
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 1.2e-50 203.8 195 62.1
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 1.2e-50 203.8 182 63.7
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 1.2e-50 203.8 195 64.1
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 1.6e-50 203.4 192 62.5
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 1.6e-50 203.4 102 95.1
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 2.0e-50 203.0 199 62.3
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.7e-50 202.6 194 61.9
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 2.7e-50 202.6 194 61.9
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 2.7e-50 202.6 213 58.7
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 3.5e-50 202.2 193 61.1
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 3.5e-50 202.2 193 62.2
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.5e-50 202.2 194 61.3
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 3.5e-50 202.2 198 61.1
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 4.6e-50 201.8 205 62.0
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 4.6e-50 201.8 206 58.7
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 5.9e-50 201.4 185 61.1
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 5.9e-50 201.4 102 94.1
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 5.9e-50 201.4 200 59.0
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 5.9e-50 201.4 205 57.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 5.9e-50 201.4 102 94.1
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 7.8e-50 201.1 193 62.2
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 7.8e-50 201.1 204 59.3
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 7.8e-50 201.1 162 66.0
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.0e-49 200.7 196 59.2
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 1.0e-49 200.7 193 60.6
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 1.0e-49 200.7 193 61.7
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 1.0e-49 200.7 193 61.7
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.0e-49 200.7 195 62.1
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.3e-49 200.3 102 93.1
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.3e-49 200.3 198 59.6
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.3e-49 200.3 193 61.1
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.3e-49 200.3 198 59.6
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.3e-49 200.3 193 61.7
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.3e-49 200.3 195 62.1
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.3e-49 200.3 195 62.1
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.7e-49 199.9 119 80.7
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 1.7e-49 199.9 196 59.7
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 2.3e-49 199.5 202 60.4
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 2.3e-49 199.5 195 61.0
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 3.0e-49 199.1 197 59.4
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 3.0e-49 199.1 197 59.4
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 3.0e-49 199.1 197 59.4
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 3.9e-49 198.7 199 60.3
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 5.0e-49 198.4 205 61.0
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 5.0e-49 198.4 201 61.7
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 6.6e-49 198.0 112 83.9
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 6.6e-49 198.0 216 56.0
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 8.6e-49 197.6 202 56.9
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 1.5e-48 196.8 202 60.4
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 1.9e-48 196.4 111 84.7
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 4.3e-48 195.3 195 60.0
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 5.6e-48 194.9 202 57.9
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 2.1e-47 193.0 102 89.2
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 2.1e-47 193.0 189 59.3
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.7e-47 191.8 192 60.9
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 4.7e-47 191.8 117 80.3
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 1.1e-46 190.7 191 57.6
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 1.4e-46 190.3 190 57.9
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 2.2e-44 183.0 174 58.0
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 3.7e-44 182.2 101 88.1
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 6.4e-44 181.4 98 85.7
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 1.9e-43 179.9 147 68.7
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 1.9e-40 169.9 119 68.1
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 8.1e-39 164.5 128 63.3
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 5.2e-38 161.8 190 53.2
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.5e-37 160.2 191 51.8
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.4e-37 159.1 186 52.7
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 4.4e-37 158.7 208 50.0
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 5.8e-37 158.3 104 72.1
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 2.3e-33 146.4 203 44.3
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 1.2e-31 140.6 107 60.7
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 6.8e-30 134.8 99 63.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.1e-22 110.9 100 51.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 1.1e-19 100.9 167 38.3


User provided reference genes

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