Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.9e-237 825.5 421 100.0
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.4e-144 516.2 420 70.0
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 4.6e-143 511.9 421 69.1
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.8e-134 483.4 434 65.4
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 8.7e-134 481.1 420 66.0
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.4e-133 478.0 425 64.2
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.3e-132 477.2 442 62.4
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 9.0e-131 471.1 467 57.8
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.0e-131 471.1 450 61.3
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.7e-129 466.8 425 63.1
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 4.2e-128 462.2 453 60.0
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 5.5e-128 461.8 473 58.1
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.6e-127 460.3 442 59.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.1e-127 459.9 431 60.6
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 2.7e-127 459.5 461 58.1
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.7e-127 459.5 425 62.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.7e-127 459.5 438 62.1
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.8e-126 456.8 446 60.5
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 5.1e-126 455.3 460 59.3
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 8.7e-126 454.5 446 58.7
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.5e-125 453.8 444 61.0
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 5.7e-125 451.8 459 58.4
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 5.7e-125 451.8 459 58.8
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 5.7e-125 451.8 478 56.5
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 9.7e-125 451.1 446 58.5
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.3e-124 450.7 457 58.4
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.6e-124 450.3 464 57.8
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 4.8e-124 448.7 451 59.0
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.4e-123 447.2 430 61.9
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.4e-123 447.2 446 58.3
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 9.0e-123 444.5 438 60.7
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.2e-122 444.1 488 56.1
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.0e-122 443.4 458 58.1
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.9e-121 439.5 437 60.9
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 8.5e-121 438.0 489 55.6
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 7.2e-120 434.9 489 55.0
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.1e-119 433.3 418 62.2
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.0e-118 431.0 488 54.7
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.8e-118 430.3 458 57.0
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.8e-118 430.3 488 54.5
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.9e-118 429.1 489 54.6
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.3e-117 426.0 424 59.7
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 4.3e-117 425.6 442 58.4
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 5.7e-117 425.2 455 55.8
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 5.7e-117 425.2 445 58.2
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.1e-115 421.0 451 56.1
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.8e-115 420.2 459 56.6
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.4e-115 419.9 443 56.9
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 4.1e-115 419.1 454 56.8
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 5.3e-115 418.7 447 56.2
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 5.3e-115 418.7 456 55.7
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 2.6e-114 416.4 467 55.5
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 2.2e-113 413.3 440 58.2
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.2e-113 413.3 451 57.2
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 6.5e-113 411.8 455 54.9
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 5.5e-112 408.7 446 55.4
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 7.2e-112 408.3 438 57.3
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 9.4e-112 407.9 484 54.1
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.2e-111 407.5 463 55.9
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 3.6e-111 406.0 484 51.4
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.4e-110 404.1 483 51.1
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 6.7e-110 401.7 496 52.6
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 1.1e-109 401.0 498 51.8
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.0e-109 400.2 431 57.5
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 2.6e-109 399.8 447 55.3
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 7.4e-109 398.3 497 51.7
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 9.7e-109 397.9 472 52.3
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 6.3e-108 395.2 417 57.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.4e-107 394.0 462 54.1
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.4e-107 393.3 444 55.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.2e-106 391.0 439 55.4
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.5e-106 390.6 499 51.1
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 2.6e-106 389.8 439 55.6
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 4.5e-106 389.0 482 52.9
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 5.0e-105 385.6 430 56.5
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 5.0e-105 385.6 405 57.8
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.1e-104 384.4 456 53.9
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 2.5e-104 383.3 466 53.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.2e-103 380.9 429 54.1
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 8.0e-103 378.3 504 49.2
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.4e-102 377.5 444 54.5
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.4e-102 377.5 514 48.2
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.8e-102 377.1 424 56.4
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 3.0e-102 376.3 498 48.6
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 9.7e-101 371.3 443 54.4
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-100 370.9 433 54.0
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 3.7e-100 369.4 431 53.8
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.8e-100 369.0 430 54.4
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 6.3e-100 368.6 432 54.2
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.1e-99 367.9 407 55.0
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 3.1e-99 366.3 473 51.8
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 9.1e-99 364.8 444 53.8
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.2e-98 364.4 446 53.1
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 4.5e-98 362.5 446 52.5
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.0e-97 361.3 450 51.8
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 2.7e-95 353.2 450 51.1
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.5e-93 347.4 418 54.3
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.7e-92 344.0 456 49.6
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 6.3e-92 342.0 434 51.8
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.4e-91 340.9 407 53.3
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.6e-90 337.4 510 46.3
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.1e-88 331.3 432 49.3
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 3.2e-88 329.7 485 47.2
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.6e-87 327.4 389 50.6
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 2.3e-86 323.6 457 47.5
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 3.4e-85 319.7 510 44.1
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.7e-84 317.4 487 45.8
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 3.7e-84 316.2 207 78.7
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.1e-80 304.7 378 51.1
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.8e-78 297.4 171 86.5
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.8e-78 297.4 412 48.1
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.5e-77 294.3 436 46.8
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.0e-74 283.9 183 78.7
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 5.0e-73 279.3 501 42.3
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.1e-72 278.1 377 50.4
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 3.6e-71 273.1 474 43.2
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.0e-70 271.6 331 52.3
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 6.4e-68 262.3 320 50.6
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.2e-66 258.1 489 41.5
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 7.3e-64 248.8 450 42.0
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.8e-63 246.9 364 47.5
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.9e-56 224.2 128 85.2
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 2.3e-49 200.7 384 41.4
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.5e-48 198.0 171 64.3
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.7e-47 193.0 306 45.8
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 2.0e-45 187.6 484 35.3
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 9.0e-38 162.2 172 50.0
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 7.6e-37 159.1 389 36.2
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.7e-36 157.9 406 34.7
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 7.1e-35 152.5 208 42.3
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.6e-29 132.5 80 80.0
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.8e-25 121.3 168 47.6
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 8.7e-25 119.0 256 34.4
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 4.3e-24 116.7 65 87.7
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.9e-20 104.0 97 58.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.1e-18 97.8 112 50.0
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.6e-16 89.7 116 47.4
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 2.8e-15 87.4 102 47.1
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 2.8e-15 87.4 102 47.1
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.1e-14 85.5 58 72.4
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 3.1e-14 84.0 394 26.9
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 3.1e-14 84.0 394 26.9
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.2e-10 72.0 105 45.7
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 2.8e-07 60.8 168 34.5


User provided reference genes

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