Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 0.0e+00 1881.3 992 100.0
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 0.0e+00 1237.2 1029 67.0
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 0.0e+00 1190.3 1034 63.3
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 8.8e-302 1040.4 953 60.7
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 4.5e-290 1001.5 952 55.5
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.7e-289 999.6 952 55.6
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.2e-287 993.4 944 56.4
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.2e-285 986.9 951 56.7
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 2.4e-283 979.2 1049 53.5
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 9.1e-283 977.2 945 54.4
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.4e-267 926.8 1007 55.0
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.0e-262 910.6 994 50.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 9.8e-261 904.0 947 52.1
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.6e-258 896.7 950 51.5
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 7.8e-258 894.4 945 51.3
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 6.6e-257 891.3 911 53.2
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 3.3e-256 889.0 948 52.4
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 8.9e-254 880.9 952 51.4
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 2.2e-252 876.3 835 55.3
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.1e-246 857.4 947 50.1
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.3e-246 856.3 945 49.9
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 3.1e-246 855.9 949 49.6
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 7.6e-245 851.3 945 50.3
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 3.7e-244 849.0 947 49.7
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 6.4e-244 848.2 950 49.6
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 8.3e-244 847.8 983 49.8
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 4.1e-243 845.5 957 50.8
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 4.7e-239 832.0 954 48.7
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.0e-237 826.6 945 47.6
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.2e-236 823.2 952 47.0
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.4e-235 820.5 962 48.4
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 9.3e-235 817.8 978 47.6
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 3.0e-233 812.8 942 46.9
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 3.9e-233 812.4 947 48.3
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 5.1e-233 812.0 948 47.2
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.6e-233 811.6 942 46.8
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.1e-232 810.8 943 48.4
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 2.5e-232 809.7 944 48.1
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 4.3e-232 808.9 949 48.2
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 4.3e-232 808.9 948 48.3
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 3.6e-231 805.8 943 47.7
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 8.1e-231 804.7 934 48.5
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.1e-230 804.3 949 46.7
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 6.9e-230 801.6 943 47.7
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 9.0e-230 801.2 937 47.4
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.4e-227 793.1 942 46.2
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.2e-226 790.8 950 46.5
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.3e-225 787.3 954 47.4
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.1e-225 785.4 942 45.6
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 4.5e-221 772.3 943 45.8
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.9e-219 766.9 920 47.1
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.4e-219 766.5 952 48.2
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 3.2e-219 766.1 951 45.8
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 8.7e-217 758.1 943 45.6
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.1e-216 757.7 950 46.2
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.6e-216 755.4 950 45.3
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 6.2e-215 751.9 919 46.4
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.5e-213 747.3 920 46.0
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 4.6e-210 735.7 918 45.8
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 7.9e-210 734.9 926 46.1
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 8.7e-209 731.5 950 43.7
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.1e-206 724.5 950 44.9
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 5.3e-206 722.2 942 44.1
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 8.4e-204 714.9 935 43.6
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.1e-203 714.5 944 43.6
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.4e-203 714.1 1408 35.8
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.2e-203 713.0 899 44.8
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 3.2e-203 713.0 966 43.1
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 3.1e-198 696.4 942 43.4
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.1e-195 688.0 950 41.7
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 6.7e-193 678.7 945 43.8
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.1e-192 677.9 828 46.7
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.8e-190 670.6 914 41.6
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 3.9e-185 652.9 957 40.8
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 6.3e-183 645.6 931 40.9
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.1e-179 634.8 920 41.8
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 3.6e-178 629.8 929 40.8
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 4.7e-178 629.4 933 42.3
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.7e-177 625.5 933 41.7
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.8e-177 625.2 933 41.9
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.7e-175 619.8 920 39.2
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 5.5e-171 605.9 829 44.3
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-169 601.3 927 41.0
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 2.3e-161 573.9 902 37.9
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.5e-160 571.2 926 38.8
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 2.0e-160 570.9 926 38.8
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 2.2e-159 567.4 1393 32.0
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.1e-158 563.1 969 37.2
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 4.5e-157 559.7 925 38.5
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-156 558.5 926 38.0
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.3e-156 558.1 926 38.0
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.3e-156 558.1 926 37.9
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.3e-156 558.1 942 38.2
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 7.2e-155 552.4 962 37.6
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 8.0e-154 548.9 932 38.7
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.0e-152 544.3 748 43.0
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 3.4e-152 543.5 935 37.2
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 4.9e-151 539.7 926 37.3
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 7.0e-150 535.8 922 37.0
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.2e-149 535.0 935 37.0
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.0e-148 531.9 922 37.3
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 3.9e-148 530.0 925 37.7
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 5.0e-148 529.6 925 36.6
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.6e-146 524.6 912 36.7
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.2e-144 518.5 965 35.9
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.9e-139 501.1 923 35.5
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 5.6e-139 499.6 943 35.8
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.8e-138 497.3 932 36.7
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 8.1e-138 495.7 520 49.0
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.3e-137 494.2 462 54.5
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 1.1e-134 485.3 936 34.5
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.3e-129 467.6 408 57.6
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.2e-126 457.2 924 34.4
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 4.1e-126 456.8 578 46.5
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.4e-118 431.0 490 48.0
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.6e-114 418.3 730 38.1
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 9.3e-102 375.9 322 59.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.7e-95 355.1 330 55.5
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 8.4e-95 352.8 460 43.3
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.1e-91 342.4 363 52.1
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.9e-86 325.1 275 62.9
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 5.1e-84 317.0 483 39.1
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.9e-83 315.1 430 41.6
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.4e-81 308.1 440 43.0
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.3e-81 307.0 541 36.6
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 5.3e-81 307.0 308 52.3
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 7.7e-80 303.1 348 50.3
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 8.5e-79 299.7 1161 24.8
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 3.6e-77 294.3 434 40.6
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 4.6e-77 293.9 359 47.6
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 5.3e-73 280.4 465 37.4
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 5.5e-70 270.4 556 33.8
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.6e-69 268.9 701 29.5
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 6.7e-68 263.5 865 27.5
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 9.7e-67 259.6 876 26.4
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.4e-60 239.2 280 47.5
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 9.7e-59 233.0 269 45.7
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.7e-58 231.1 349 39.3
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.1e-53 215.3 434 36.2
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.0e-52 213.0 175 61.1
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 2.3e-52 211.8 299 41.1
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 4.1e-49 201.1 184 54.3
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.6e-45 189.1 347 36.3
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-42 179.5 465 31.0
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.3e-39 169.5 296 35.8
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.3e-39 169.5 146 55.5
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 5.0e-39 167.5 178 51.1
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 4.7e-37 161.0 428 30.4
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 2.9e-34 151.8 164 50.6
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 8.3e-34 150.2 196 44.9
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 3.2e-33 148.3 200 44.0
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.0e-33 147.1 179 46.4
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 4.3e-30 137.9 86 73.3
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 9.5e-30 136.7 85 74.1
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 8.0e-29 133.7 205 40.0
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 3.1e-28 131.7 104 58.7
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.4e-27 127.9 177 44.6
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.7e-26 124.8 80 71.2
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.2e-25 121.7 135 46.7
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.6e-24 119.4 99 55.6
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 2.0e-24 119.0 122 54.9
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 7.8e-24 117.1 314 29.9
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.5e-22 112.1 170 41.8
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.6e-21 109.4 99 55.6
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.8e-20 105.9 125 46.4
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 1.2e-19 103.2 122 46.7
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 3.4e-19 101.7 187 33.7
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.1e-17 94.7 116 44.0
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 5.6e-14 84.3 128 38.3
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 3.6e-13 81.6 81 58.0
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 3.6e-13 81.6 103 42.7
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.2e-12 77.8 58 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 4.4e-11 74.7 79 46.8
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 9.9e-11 73.6 82 45.1
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.4e-09 69.7 48 60.4
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 4.1e-09 68.2 48 64.6
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.6e-08 66.2 48 60.4
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 2.3e-07 62.4 85 43.5
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 6.6e-07 60.8 70 45.7
Lj9A422T77 Lonicera japonica HOM05D003469 ORTHO05D004084 6.6e-07 60.8 38 68.4
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 1.9e-06 59.3 84 38.1
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.5e-06 58.9 40 62.5
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 2.5e-06 58.9 150 31.3
Cc05_g03240 Coffea canephora HOM05D003469 ORTHO05D029064 9.6e-06 57.0 45 60.0


User provided reference genes

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