Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 2.6e-97 358.6 170 100.0
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 3.2e-63 245.4 172 71.5
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 7.7e-57 224.2 169 66.9
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 9.5e-55 217.2 134 75.4
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.6e-52 209.1 171 59.6
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 1.3e-51 206.8 164 64.6
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.7e-51 206.5 164 61.0
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 2.9e-51 205.7 189 57.1
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 4.9e-51 204.9 138 70.3
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 6.4e-51 204.5 170 60.0
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 8.3e-51 204.1 183 58.5
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 3.2e-50 202.2 170 62.4
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 4.1e-50 201.8 126 75.4
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 5.4e-50 201.4 170 62.4
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 9.2e-50 200.7 124 75.0
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 1.2e-49 200.3 155 65.8
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 1.2e-49 200.3 127 74.8
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.7e-49 199.1 180 59.4
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 2.7e-49 199.1 125 74.4
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 3.5e-49 198.7 165 62.4
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 3.5e-49 198.7 170 57.1
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 5.9e-49 198.0 165 60.6
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 5.9e-49 198.0 128 71.1
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 5.9e-49 198.0 174 61.5
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 7.8e-49 197.6 166 60.2
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 7.8e-49 197.6 114 79.8
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 7.8e-49 197.6 142 66.2
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 7.8e-49 197.6 125 73.6
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.0e-48 197.2 112 80.4
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.3e-48 196.8 124 75.8
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 2.3e-48 196.1 113 81.4
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 2.3e-48 196.1 113 81.4
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 3.0e-48 195.7 187 55.6
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 3.0e-48 195.7 174 59.2
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 5.0e-48 194.9 171 59.6
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 8.6e-48 194.1 115 78.3
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 1.1e-47 193.7 112 80.4
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 1.1e-47 193.7 113 79.6
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.5e-47 193.4 169 59.2
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 1.5e-47 193.4 127 71.7
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.5e-47 193.4 174 58.6
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 1.5e-47 193.4 198 53.5
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 1.9e-47 193.0 121 75.2
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.9e-47 193.0 114 78.9
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 2.5e-47 192.6 161 59.6
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 2.5e-47 192.6 112 77.7
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 2.5e-47 192.6 130 68.5
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.3e-47 192.2 178 56.7
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 4.3e-47 191.8 154 61.7
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 5.6e-47 191.4 130 66.2
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 9.5e-47 190.7 168 56.5
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 9.5e-47 190.7 112 78.6
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 9.5e-47 190.7 126 70.6
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.2e-46 190.3 127 70.9
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 1.6e-46 189.9 112 78.6
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 3.6e-46 188.7 123 69.1
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.6e-46 188.7 121 71.1
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 8.0e-46 187.6 173 56.1
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 8.0e-46 187.6 112 76.8
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 1.0e-45 187.2 123 68.3
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 1.0e-45 187.2 123 68.3
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 1.4e-45 186.8 123 68.3
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 1.4e-45 186.8 168 56.5
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 1.4e-45 186.8 123 68.3
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 1.4e-45 186.8 123 68.3
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 1.8e-45 186.4 123 69.1
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 1.8e-45 186.4 131 64.1
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.3e-45 186.0 131 64.1
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.3e-45 186.0 171 56.7
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 2.3e-45 186.0 126 69.8
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.3e-45 186.0 159 61.6
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 3.1e-45 185.7 112 75.9
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 3.1e-45 185.7 127 70.9
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 4.0e-45 185.3 169 56.2
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 4.0e-45 185.3 173 55.5
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 4.0e-45 185.3 112 75.9
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 5.2e-45 184.9 112 74.1
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.8e-45 184.5 123 70.7
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 6.8e-45 184.5 125 68.0
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 1.5e-44 183.3 124 70.2
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 2.0e-44 183.0 120 70.0
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 2.6e-44 182.6 122 66.4
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 4.4e-44 181.8 166 54.2
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 4.4e-44 181.8 114 74.6
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 9.8e-44 180.6 121 71.1
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 2.9e-43 179.1 113 71.7
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 2.9e-43 179.1 124 65.3
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 1.1e-42 177.2 131 63.4
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.9e-42 176.4 179 54.2
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 2.0e-41 172.9 127 62.2
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 2.3e-40 169.5 112 73.2
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 3.0e-40 169.1 116 69.8
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.0e-40 169.1 116 69.8
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 6.6e-40 167.9 112 72.3
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 7.3e-39 164.5 109 67.0
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 6.2e-38 161.4 103 69.9
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.4e-36 155.6 119 63.9
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 3.4e-36 155.6 144 58.3
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.4e-36 155.2 138 54.3
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 8.3e-35 151.0 170 45.3
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 3.2e-34 149.1 119 54.6
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 1.6e-33 146.7 128 50.8
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 1.6e-33 146.7 123 52.0
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.1e-33 146.4 133 52.6
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.1e-33 146.4 137 49.6
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 2.7e-33 146.0 104 58.7
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.7e-33 146.0 115 56.5
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 4.6e-33 145.2 112 54.5
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 7.8e-33 144.4 109 56.9
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 1.0e-32 144.1 175 43.4
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.3e-32 143.7 108 54.6
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 1.3e-32 143.7 109 55.0
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.7e-32 143.3 109 53.2
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.7e-32 143.3 107 56.1
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.3e-32 142.9 108 57.4
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 3.0e-32 142.5 108 55.6
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 5.1e-32 141.7 108 58.3
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 6.6e-32 141.4 130 48.5
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 1.9e-31 139.8 140 48.6
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 3.3e-31 139.0 130 49.2
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 4.3e-31 138.7 109 53.2
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 5.6e-31 138.3 104 55.8
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 5.6e-31 138.3 108 54.6
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 5.6e-31 138.3 107 54.2
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 9.5e-31 137.5 110 52.7
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 9.5e-31 137.5 108 53.7
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 1.2e-30 137.1 132 47.0
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 1.2e-30 137.1 106 54.7
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 2.1e-30 136.3 107 53.3
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.8e-30 136.0 99 61.6
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.8e-30 136.0 104 54.8
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.7e-30 135.2 109 53.2
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 6.2e-30 134.8 107 55.1
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.2e-30 134.8 138 44.9
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 8.1e-30 134.4 116 52.6
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 1.1e-29 134.0 107 56.1
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.4e-29 133.7 106 53.8
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.8e-29 133.3 125 45.6
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.3e-29 132.9 136 44.1
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 2.3e-29 132.9 152 46.1
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 3.1e-29 132.5 133 48.1
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 4.0e-29 132.1 109 51.4
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.0e-29 132.1 109 51.4
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 5.2e-29 131.7 104 51.9
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.5e-28 130.2 109 51.4
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 2.0e-28 129.8 164 40.2
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.6e-28 129.4 95 58.9
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 1.3e-27 127.1 137 45.3
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.2e-27 126.3 115 47.8
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 3.8e-27 125.6 97 56.7
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.4e-26 123.6 123 46.3
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.4e-26 122.9 156 39.7
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.4e-26 122.9 103 55.3
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 7.1e-26 121.3 171 38.0
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 3.5e-25 119.0 89 56.2
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 7.8e-25 117.9 59 84.7
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.3e-24 117.1 61 83.6
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 3.0e-24 115.9 115 48.7
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 3.0e-24 115.9 115 48.7
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 1.4e-21 107.1 59 74.6
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 3.1e-21 105.9 53 79.2
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 6.9e-21 104.8 192 31.2
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 2.6e-20 102.8 141 39.7
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 5.8e-20 101.7 98 56.1
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 7.6e-20 101.3 94 47.9
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 3.2e-18 95.9 215 27.9
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 1.0e-16 90.9 134 42.5
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 3.9e-16 89.0 63 60.3
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 1.4e-13 80.5 48 70.8
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.3e-11 73.9 77 45.5
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 2.7e-09 66.2 94 36.2
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 4.6e-09 65.5 90 38.9
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.9e-08 62.4 75 37.3
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.1e-07 60.8 50 50.0
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 1.9e-07 60.1 51 56.9
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 1.9e-07 60.1 49 49.0
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 4.3e-07 58.9 47 51.1
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 1.6e-06 57.0 80 36.2
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 1.6e-06 57.0 85 31.8
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 2.1e-06 56.6 82 35.4


User provided reference genes

Program Settings