Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 5.9e-86 320.9 165 100.0
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 1.7e-24 116.7 61 96.7
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 1.7e-24 116.7 62 95.2
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 2.2e-24 116.3 61 95.1
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.8e-24 115.5 61 95.1
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.8e-24 115.5 61 95.1
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 1.9e-20 103.2 69 75.4
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 5.6e-20 101.7 61 80.3
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.3e-19 100.5 61 80.3
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.6e-19 100.1 61 80.3
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.6e-19 100.1 61 80.3
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 4.0e-18 95.5 49 95.9
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.2e-17 94.0 66 72.7
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 1.2e-17 94.0 61 77.0
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.2e-17 94.0 61 77.0
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.5e-17 93.6 61 77.0
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.5e-17 93.6 61 77.0
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 1.5e-17 93.6 61 77.0
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.5e-17 93.6 61 77.0
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 3.4e-17 92.4 75 65.3
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 1.3e-16 90.5 61 75.4
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.7e-16 90.1 69 69.6
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 4.9e-16 88.6 62 72.6
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 4.9e-16 88.6 51 82.4
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 4.9e-16 88.6 62 72.6
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 6.4e-16 88.2 62 74.2
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 6.4e-16 88.2 72 65.3
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.4e-16 88.2 67 67.2
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.4e-16 88.2 67 67.2
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 8.4e-16 87.8 61 73.8
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 8.4e-16 87.8 61 73.8
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 1.1e-15 87.4 61 72.1
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 1.1e-15 87.4 63 71.4
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 1.4e-15 87.0 61 73.8
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 1.9e-15 86.7 61 72.1
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 1.9e-15 86.7 61 72.1
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 2.4e-15 86.3 61 72.1
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 3.2e-15 85.9 61 72.1
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 3.2e-15 85.9 61 72.1
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 4.2e-15 85.5 61 72.1
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 4.2e-15 85.5 61 72.1
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 4.2e-15 85.5 61 72.1
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 4.2e-15 85.5 58 75.9
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 5.5e-15 85.1 61 73.8
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 7.1e-15 84.7 61 72.1
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 7.1e-15 84.7 63 74.6
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 7.1e-15 84.7 63 74.6
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 7.1e-15 84.7 61 72.1
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 7.1e-15 84.7 61 72.1
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 7.1e-15 84.7 63 69.8
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 9.3e-15 84.3 62 75.8
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 9.3e-15 84.3 84 58.3
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 1.2e-14 84.0 60 70.0
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.2e-14 84.0 61 72.1
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 1.2e-14 84.0 61 70.5
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.2e-14 84.0 61 70.5
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.2e-14 84.0 61 70.5
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.2e-14 84.0 61 72.1
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 1.2e-14 84.0 58 75.9
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.6e-14 83.6 59 71.2
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.6e-14 83.6 61 70.5
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 1.6e-14 83.6 61 72.1
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 2.1e-14 83.2 61 68.9
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 2.7e-14 82.8 61 68.9
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 2.7e-14 82.8 61 70.5
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 2.7e-14 82.8 61 70.5
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.7e-14 82.8 61 70.5
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.7e-14 82.8 61 70.5
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.7e-14 82.8 61 70.5
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.7e-14 82.8 61 70.5
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.7e-14 82.8 61 70.5
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 2.7e-14 82.8 61 70.5
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 2.7e-14 82.8 59 72.9
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 3.5e-14 82.4 61 70.5
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 4.6e-14 82.0 62 69.4
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 4.6e-14 82.0 61 70.5
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 4.6e-14 82.0 60 70.0
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 6.0e-14 81.6 63 69.8
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 7.9e-14 81.3 58 72.4
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 7.9e-14 81.3 60 68.3
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.0e-13 80.9 62 72.6
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.0e-13 80.9 62 72.6
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.0e-13 80.9 62 72.6
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.0e-13 80.9 62 72.6
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 1.0e-13 80.9 62 72.6
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 1.0e-13 80.9 62 72.6
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.0e-13 80.9 61 68.9
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.0e-13 80.9 61 68.9
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 1.3e-13 80.5 63 71.4
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 1.3e-13 80.5 58 70.7
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 1.3e-13 80.5 59 71.2
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 1.8e-13 80.1 63 68.3
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.8e-13 80.1 61 68.9
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 3.9e-13 79.0 59 67.8
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 3.9e-13 79.0 58 69.0
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 5.1e-13 78.6 47 78.7
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 6.7e-13 78.2 56 71.4
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 8.7e-13 77.8 56 71.4
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 8.7e-13 77.8 61 68.9
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 8.7e-13 77.8 61 68.9
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 2.5e-12 76.3 60 61.7
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 2.5e-12 76.3 57 71.9
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 3.3e-12 75.9 52 76.9
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 4.3e-12 75.5 58 69.0
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 9.6e-12 74.3 61 65.6
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 1.4e-10 70.5 60 61.7
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 2.4e-10 69.7 61 62.3
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 2.4e-10 69.7 61 59.0
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 6.9e-10 68.2 61 62.3
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 9.0e-10 67.8 54 63.0
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.2e-09 67.4 61 62.3
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.5e-09 67.0 52 65.4
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 4.5e-09 65.5 57 57.9
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 1.0e-08 64.3 51 62.7
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 1.7e-08 63.5 57 56.1
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 4.9e-08 62.0 48 60.4
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 4.9e-08 62.0 48 60.4
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 1.4e-07 60.5 58 56.9
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 2.5e-07 59.7 48 60.4
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 3.2e-07 59.3 57 52.6
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 5.5e-07 58.5 57 54.4
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 7.1e-07 58.2 48 52.1
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 4.6e-06 55.5 48 56.2
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 7.9e-06 54.7 48 56.2
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 7.9e-06 54.7 55 50.9


User provided reference genes

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