Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 3.0e-126 455.3 248 100.0
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.2e-66 257.3 231 64.9
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.1e-64 250.8 192 69.3
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 3.5e-58 229.2 200 58.5
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 2.1e-55 219.9 237 55.7
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 2.1e-55 219.9 195 63.6
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 7.1e-51 204.9 181 60.8
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.3e-49 199.9 227 49.3
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.6e-49 198.4 184 56.0
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.5e-48 197.2 225 48.4
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.6e-48 195.3 184 55.4
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 3.6e-47 192.6 223 48.9
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 3.6e-47 192.6 223 48.9
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 5.3e-46 188.7 167 57.5
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.7e-44 183.7 125 68.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.8e-44 182.6 209 49.8
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 7.1e-43 178.3 213 47.4
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 7.1e-43 178.3 213 47.4
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.2e-42 177.6 222 45.9
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.5e-42 176.0 213 46.9
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.5e-42 176.0 213 46.9
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.0e-42 175.3 213 47.4
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 1.8e-41 173.7 126 71.4
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 2.3e-41 173.3 126 71.4
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 3.9e-41 172.6 125 68.0
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 5.1e-41 172.2 203 49.3
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 5.1e-41 172.2 170 51.2
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 5.1e-41 172.2 193 51.3
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.5e-40 170.6 169 55.0
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.5e-40 169.9 128 68.8
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 3.3e-40 169.5 259 42.5
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 4.3e-40 169.1 166 53.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 5.6e-40 168.7 170 51.2
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 9.6e-40 167.9 270 40.7
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 9.6e-40 167.9 169 52.1
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 2.1e-39 166.8 224 46.0
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 2.8e-39 166.4 125 66.4
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 3.7e-39 166.0 167 56.3
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 4.8e-39 165.6 125 67.2
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.8e-39 165.6 195 47.2
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 4.8e-39 165.6 199 45.7
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 1.1e-38 164.5 127 64.6
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.1e-38 164.5 127 64.6
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 1.1e-38 164.5 127 64.6
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 1.1e-38 164.5 127 64.6
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.1e-38 164.5 127 64.6
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.1e-38 164.5 209 46.4
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.4e-38 164.1 234 42.7
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.8e-38 163.7 127 63.8
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.8e-38 163.7 127 65.4
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 2.4e-38 163.3 127 63.8
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 2.4e-38 163.3 127 63.0
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 2.4e-38 163.3 177 50.3
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 4.0e-38 162.5 127 63.8
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 4.0e-38 162.5 186 47.8
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 5.3e-38 162.2 126 67.5
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 9.0e-38 161.4 167 51.5
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 9.0e-38 161.4 226 44.7
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 9.0e-38 161.4 251 41.8
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 9.0e-38 161.4 199 45.2
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 9.0e-38 161.4 185 48.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 9.0e-38 161.4 168 51.8
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 2.0e-37 160.2 170 49.4
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.8e-37 158.7 127 63.8
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.8e-37 158.7 127 63.8
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 5.8e-37 158.7 170 49.4
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 7.6e-37 158.3 127 62.2
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 9.9e-37 157.9 131 59.5
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.3e-36 157.5 185 46.5
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 1.7e-36 157.1 170 52.4
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 2.2e-36 156.8 176 48.3
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.9e-36 156.4 169 52.7
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 4.9e-36 155.6 186 47.8
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.4e-36 155.2 124 63.7
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 8.4e-36 154.8 170 52.4
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.1e-35 154.5 181 50.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.9e-35 153.7 127 59.1
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 7.1e-35 151.8 127 58.3
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 9.3e-35 151.4 126 61.1
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 2.1e-34 150.2 253 38.7
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.7e-34 149.8 170 50.6
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 3.5e-34 149.4 203 42.9
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.0e-33 147.9 121 59.5
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 1.8e-33 147.1 125 58.4
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.8e-33 147.1 122 58.2
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.8e-33 147.1 229 41.5
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.0e-33 146.4 248 39.9
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 3.0e-33 146.4 170 50.0
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 5.1e-33 145.6 194 44.3
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 5.1e-33 145.6 194 44.3
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.1e-32 144.4 126 60.3
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.5e-32 144.1 171 47.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.3e-32 142.9 126 56.3
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 5.6e-32 142.1 116 62.1
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 5.6e-32 142.1 126 59.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.6e-31 140.6 126 55.6
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.6e-31 140.6 239 39.7
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.8e-30 137.1 110 64.5
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.2e-29 134.4 125 50.4
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 6.5e-28 128.6 171 43.9
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 2.5e-27 126.7 186 43.0
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.2e-26 124.4 128 50.8
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 2.1e-26 123.6 123 56.1
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 3.5e-26 122.9 121 52.1
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.3e-25 120.9 102 60.8
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 3.9e-25 119.4 128 50.0
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 3.9e-25 119.4 128 50.0
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 8.7e-25 118.2 104 60.6
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 3.7e-23 112.8 77 64.9
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 6.3e-23 112.1 87 57.5
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.9e-19 100.5 192 36.5
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 3.6e-18 96.3 120 45.8
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 3.3e-16 89.7 90 52.2
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 7.4e-16 88.6 133 37.6
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.0e-13 80.5 145 40.0
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 3.4e-13 79.7 99 44.4
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.7e-12 77.4 167 44.3
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 9.4e-11 71.6 69 49.3
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 2.7e-10 70.1 46 65.2
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 2.0e-08 63.9 63 49.2
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 2.6e-08 63.5 63 49.2
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 2.6e-08 63.5 81 46.9
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 3.3e-08 63.2 85 43.5
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 3.3e-08 63.2 119 32.8
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 4.4e-08 62.8 85 42.4
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.7e-07 60.8 138 31.2
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 8.2e-07 58.5 120 30.0
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 2.4e-06 57.0 127 34.6
Ah.10g028970 Amaranthus hybridus HOM05D000964 ORTHO05D003870 9.1e-06 55.1 122 36.1
Gohir.A05G396500 Gossypium hirsutum HOM05D000964 ORTHO05D003870 9.1e-06 55.1 122 36.9


User provided reference genes

Program Settings