Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 0.0e+00 1207.2 599 100.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.5e-67 261.5 825 30.3
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 6.5e-50 203.0 475 32.8
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.8e-45 187.6 340 36.5
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 2.8e-45 187.6 278 39.6
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 6.3e-45 186.4 405 33.3
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.1e-44 185.7 302 37.4
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.8e-44 184.9 332 35.8
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.4e-44 184.5 343 35.6
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 3.1e-44 184.1 262 39.7
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 4.1e-44 183.7 325 34.8
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 5.3e-44 183.3 335 34.3
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 9.1e-44 182.6 603 31.0
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 9.1e-44 182.6 323 35.0
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.2e-43 182.2 309 35.9
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.0e-43 181.4 309 35.9
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 2.0e-43 181.4 396 34.3
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.2e-42 177.9 330 33.9
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 2.9e-42 177.6 255 40.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 2.9e-42 177.6 319 34.8
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 3.8e-42 177.2 261 40.2
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 5.0e-42 176.8 327 34.9
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 6.5e-42 176.4 549 28.2
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.5e-42 176.4 302 35.1
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.5e-41 175.3 261 38.3
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-41 175.3 305 35.4
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.5e-41 175.3 325 34.5
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.5e-41 174.5 313 35.5
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 2.5e-41 174.5 326 35.0
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 2.5e-41 174.5 427 30.4
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.2e-41 174.1 532 29.3
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 4.2e-41 173.7 330 34.2
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 9.4e-41 172.6 320 34.4
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.6e-40 171.8 318 34.0
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 2.1e-40 171.4 319 34.8
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.1e-40 171.4 664 28.6
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 3.6e-40 170.6 316 34.8
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 4.7e-40 170.2 471 31.6
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 4.7e-40 170.2 387 32.0
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 4.7e-40 170.2 382 31.9
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 4.7e-40 170.2 517 27.7
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 4.7e-40 170.2 315 33.3
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 8.0e-40 169.5 321 32.7
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.0e-39 169.1 424 30.9
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.4e-39 168.7 312 35.3
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.4e-39 168.7 213 45.1
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 4.0e-39 167.2 264 37.1
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 5.2e-39 166.8 344 32.6
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 6.8e-39 166.4 327 33.3
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 6.8e-39 166.4 517 27.5
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 4.4e-38 163.7 361 32.7
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 4.4e-38 163.7 361 32.7
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 4.4e-38 163.7 361 32.7
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 4.4e-38 163.7 582 27.1
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 5.7e-38 163.3 320 35.9
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 5.7e-38 163.3 320 35.9
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.7e-38 163.3 517 27.3
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 5.7e-38 163.3 344 31.4
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 7.5e-38 162.9 492 27.8
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.7e-37 161.8 326 33.7
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.8e-37 161.0 346 32.4
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.8e-37 161.0 358 29.9
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 6.3e-37 159.8 328 32.0
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 8.3e-37 159.5 330 32.7
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.1e-36 159.1 348 31.3
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 5.4e-36 156.8 340 33.5
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 7.0e-36 156.4 338 32.5
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 9.1e-36 156.0 424 29.5
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 9.1e-36 156.0 300 33.0
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.0e-35 154.8 424 29.2
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 2.7e-35 154.5 340 32.1
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 3.5e-35 154.1 468 28.0
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.5e-35 154.1 432 27.8
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 3.5e-35 154.1 291 34.7
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 5.9e-35 153.3 427 29.5
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 5.9e-35 153.3 436 29.4
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 5.9e-35 153.3 320 33.1
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 7.7e-35 152.9 335 30.4
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.3e-34 152.1 284 36.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 8.5e-34 149.4 315 31.4
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.1e-33 149.1 239 36.8
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 3.2e-33 147.5 323 32.8
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.5e-33 146.7 543 26.2
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.1e-32 144.8 333 30.0
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.7e-32 144.4 260 35.8
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.7e-32 144.4 142 53.5
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.0e-31 142.5 489 27.4
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.8e-31 141.7 331 31.7
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 3.0e-31 141.0 624 26.4
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 6.8e-31 139.8 332 31.9
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.3e-29 135.6 448 28.8
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.2e-29 134.8 334 30.8
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.7e-29 134.0 541 26.6
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 2.4e-28 131.3 512 24.8
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 4.1e-28 130.6 370 30.0
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 7.0e-28 129.8 309 29.1
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 9.2e-28 129.4 512 24.8
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.6e-27 128.6 337 28.8
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 2.9e-26 124.4 157 45.2
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 5.0e-26 123.6 422 27.5
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.8e-23 115.2 128 46.9
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 3.0e-23 114.4 381 27.3
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 3.4e-22 110.9 130 46.9
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 7.5e-22 109.8 126 46.0
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.3e-21 109.0 140 42.9
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.2e-21 108.2 128 44.5
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 3.7e-21 107.5 110 51.8
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.1e-20 105.9 107 53.3
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.4e-20 104.8 128 44.5
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 3.2e-20 104.4 131 44.3
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 7.0e-20 103.2 138 42.0
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 7.8e-19 99.8 143 35.0
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.6e-18 96.3 129 40.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.5e-17 94.7 399 24.1
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.2e-14 85.9 146 39.7
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 7.0e-12 76.6 88 44.3
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 6.0e-11 73.6 102 39.2
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.0e-10 72.8 95 41.1
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.0e-10 72.8 104 39.4
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 8.6e-10 69.7 528 25.2
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.3e-09 67.8 102 38.2
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 1.2e-08 65.9 73 43.8
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.1e-07 62.8 60 48.3


User provided reference genes

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