Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 0.0e+00 1420.6 710 100.0
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 7.2e-290 1000.3 587 83.0
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 4.8e-286 987.6 610 80.8
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 4.1e-277 958.0 586 82.1
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.3e-262 909.8 590 74.9
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 1.2e-255 886.7 590 73.2
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 1.3e-254 883.2 595 74.6
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 3.7e-254 881.7 590 73.6
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 3.2e-253 878.6 589 74.0
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 9.2e-253 877.1 592 72.5
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 1.1e-250 870.2 593 72.8
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 5.6e-250 867.8 595 72.4
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 3.6e-249 865.1 593 73.2
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 3.6e-249 865.1 593 72.5
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 1.4e-248 863.2 593 72.7
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 9.8e-247 857.1 593 71.2
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 9.8e-247 857.1 593 72.2
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 1.7e-246 856.3 590 71.4
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 2.2e-246 855.9 588 72.4
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.4e-245 852.4 592 71.5
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 7.1e-245 850.9 591 71.9
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 9.2e-245 850.5 628 69.7
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 3.9e-243 845.1 590 70.7
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 8.6e-243 844.0 591 70.9
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 1.9e-242 842.8 667 66.4
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 4.3e-242 841.6 590 71.2
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 2.1e-241 839.3 590 70.3
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 6.2e-241 837.8 529 79.0
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 5.2e-240 834.7 592 70.1
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 8.9e-240 833.9 590 69.8
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 2.6e-239 832.4 589 69.3
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 5.8e-239 831.2 591 69.7
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 4.9e-238 828.2 590 70.5
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 8.4e-238 827.4 591 69.4
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 2.4e-237 825.9 592 69.3
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 4.1e-237 825.1 565 73.6
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 5.4e-237 824.7 590 69.5
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 2.7e-236 822.4 581 69.9
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 6.0e-236 821.2 591 69.9
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 6.0e-236 821.2 592 68.8
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 7.8e-236 820.8 593 69.5
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 3.9e-235 818.5 598 68.6
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 3.3e-234 815.5 556 72.8
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.4e-232 809.3 592 67.9
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 1.2e-231 807.0 590 67.8
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 3.4e-231 805.4 592 67.9
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 7.1e-229 797.7 575 69.4
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 1.2e-228 797.0 659 63.1
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 7.8e-228 794.3 590 68.8
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 2.3e-227 792.7 629 64.1
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 5.1e-227 791.6 643 64.9
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 6.6e-227 791.2 585 68.2
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 2.5e-226 789.3 559 71.9
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 7.3e-226 787.7 607 65.7
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 1.1e-224 783.9 588 66.3
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 3.4e-223 778.9 594 67.0
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 4.5e-223 778.5 590 66.3
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 7.6e-223 777.7 593 65.9
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 2.2e-222 776.2 538 72.3
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 2.2e-222 776.2 590 66.4
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 8.4e-222 774.2 590 66.3
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 4.2e-221 771.9 592 66.0
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 7.9e-220 767.7 589 66.4
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.3e-219 766.9 592 65.5
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 1.1e-218 763.8 595 65.0
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 1.5e-218 763.5 595 65.0
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 8.4e-214 747.7 588 63.9
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 1.1e-213 747.3 588 64.6
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 1.1e-213 747.3 594 65.3
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 2.1e-212 743.0 510 73.1
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 2.3e-211 739.6 596 65.6
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 1.5e-210 736.9 529 71.3
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 2.7e-204 716.1 533 68.7
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 2.5e-202 709.5 686 57.6
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 7.4e-202 708.0 597 60.5
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 1.4e-200 703.7 590 60.3
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 1.8e-200 703.4 588 62.6
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 2.6e-199 699.5 663 56.1
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 1.0e-198 697.6 606 63.0
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.7e-198 696.8 587 60.0
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 2.2e-198 696.4 594 59.6
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 3.8e-198 695.7 589 60.1
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 1.4e-197 693.7 599 62.6
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 3.2e-197 692.6 589 59.6
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 5.5e-197 691.8 589 59.6
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 1.8e-195 686.8 588 62.2
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 2.3e-195 686.4 588 59.9
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 1.9e-194 683.3 589 60.4
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 3.3e-194 682.6 591 59.4
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 1.3e-193 680.6 590 59.3
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.2e-191 674.1 496 69.4
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 2.2e-190 669.8 603 57.0
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 3.8e-190 669.1 589 58.6
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 6.1e-188 661.8 582 59.6
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 3.6e-180 636.0 550 59.8
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 2.9e-166 589.7 524 60.3
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 6.4e-145 518.8 380 68.9
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.1e-136 491.5 390 63.6
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 5.8e-130 469.2 606 45.0
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 2.2e-121 440.7 473 49.9
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 4.3e-117 426.4 598 40.6
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 1.6e-103 381.3 529 45.0
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 3.1e-99 367.1 239 76.6
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 5.0e-81 306.6 207 73.4
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 1.7e-76 291.6 288 54.5
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 5.5e-72 276.6 247 54.7
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-68 265.4 631 32.2
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.9e-56 224.9 177 62.1
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 2.8e-44 184.5 162 61.7
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 9.2e-35 152.9 121 58.7
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.2e-34 152.5 136 57.4
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 8.9e-30 136.3 110 64.5
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 3.5e-26 124.4 65 81.5
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.5e-24 119.0 67 80.6
SGA_v2.0_scaffold353G49710 Striga asiatica HOM05D015626 ORTHO05D019382 1.3e-20 105.9 88 73.9
SGA_v2.0_scaffold535G52771 Striga asiatica HOM05D015626 ORTHO05D019382 2.9e-20 104.8 90 71.1
SGA_v2.0_scaffold10G05197 Striga asiatica HOM05D015626 ORTHO05D019382 1.0e-17 96.3 55 92.7
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 2.3e-17 95.1 420 24.5
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 9.5e-16 89.7 57 78.9
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 6.2e-15 87.0 83 54.2
SGA_v2.0_scaffold83G26450 Striga asiatica HOM05D015626 ORTHO05D019382 2.3e-14 85.1 85 62.4
SGA_v2.0_scaffold330G48902 Striga asiatica HOM05D015626 ORTHO05D019382 2.6e-13 81.6 84 60.7
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 7.1e-11 73.6 38 81.6
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 3.0e-09 68.2 44 65.9
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.6e-07 62.4 41 68.3
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 2.8e-07 61.6 32 90.6
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.1e-06 59.7 54 51.9
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 1.4e-06 59.3 61 54.1


User provided reference genes

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