Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold88G27193 Striga asiatica HOM05D021674 ORTHO05D400168 2.1e-117 425.6 208 100.0
SGA_v2.0_scaffold30G12386 Striga asiatica HOM05D021674 ORTHO05D402565 4.6e-51 205.3 130 81.5
SGA_v2.0_scaffold42G15991 Striga asiatica HOM05D021674 ORTHO05D404867 2.4e-23 113.2 208 42.8
SGA_v2.0_scaffold63G21765 Striga asiatica HOM05D021674 ORTHO05D406589 2.4e-23 113.2 208 42.8
SGA_v2.0_scaffold8G04643 Striga asiatica HOM05D021674 ORTHO05D399068 6.9e-23 111.7 76 75.0
SGA_v2.0_scaffold92G28212 Striga asiatica HOM05D000032 ORTHO05D006669 5.1e-18 95.5 121 48.8
Lj1C1148G8 Lonicera japonica HOM05D000032 ORTHO05D006669 1.7e-13 80.5 150 40.0
Dinv39530 Davidia involucrata HOM05D000032 ORTHO05D006669 3.8e-13 79.3 138 37.7
Dinv15073 Davidia involucrata HOM05D000032 ORTHO05D006669 4.9e-13 79.0 121 40.5
unitig_32.g11227 Utricularia gibba HOM05D000032 ORTHO05D006669 1.1e-12 77.8 133 38.3
PGSC0003DMG400009873 Solanum tuberosum HOM05D000032 ORTHO05D006669 2.4e-12 76.6 141 38.3
Peaxi162Scf00553g00813 Petunia axillaris HOM05D000032 ORTHO05D006669 1.2e-11 74.3 121 39.7
Sabra05G0186800 Salix brachista HOM05D000032 ORTHO05D006669 1.2e-11 74.3 121 40.5
TWI56G0435 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 1.2e-11 74.3 121 38.8
Haze_22652 Corylus avellana HOM05D000032 ORTHO05D006669 4.6e-11 72.4 121 39.7
Oeu007360.3 Olea europaea HOM05D000032 ORTHO05D006669 4.6e-11 72.4 110 43.6
MSTRG.25259 Avicennia marina HOM05D000032 ORTHO05D006669 6.0e-11 72.0 111 42.3
FvH4_2g38260 Fragaria vesca HOM05D000032 ORTHO05D006669 6.0e-11 72.0 121 39.7
FAN20G2235 Fragaria x ananassa HOM05D000032 ORTHO05D006669 6.0e-11 72.0 121 39.7
FAN27G2308 Fragaria x ananassa HOM05D000032 ORTHO05D006669 6.0e-11 72.0 121 39.7
Solyc04g081580.4 Solanum lycopersicum HOM05D000032 ORTHO05D006669 7.9e-11 71.6 141 38.3
Sopen04g035190 Solanum pennellii HOM05D000032 ORTHO05D006669 7.9e-11 71.6 141 38.3
ECA240G2120 Erigeron canadensis HOM05D000032 ORTHO05D006669 1.3e-10 70.9 152 32.9
Thecc.08G046400 Theobroma cacao HOM05D000032 ORTHO05D006669 1.3e-10 70.9 146 34.2
vmacro07575 Vaccinium macrocarpon HOM05D000032 ORTHO05D006669 1.3e-10 70.9 121 38.0
CANSAT64G1040 Cannabis sativa HOM05D000032 ORTHO05D006669 1.8e-10 70.5 121 38.0
FAN15G3432 Fragaria x ananassa HOM05D000032 ORTHO05D006669 1.8e-10 70.5 144 34.7
Aa31LG2G12780 Aethionema arabicum HOM05D000032 ORTHO05D006669 2.3e-10 70.1 122 41.0
Cc00_g14370 Coffea canephora HOM05D000032 ORTHO05D006669 2.3e-10 70.1 122 40.2
Potri.005G241300 Populus trichocarpa HOM05D000032 ORTHO05D006669 2.3e-10 70.1 121 38.8
Rhsim06G0019900 Rhododendron simsii HOM05D000032 ORTHO05D006669 2.3e-10 70.1 121 37.2
ECA238G1643 Erigeron canadensis HOM05D000032 ORTHO05D006669 3.0e-10 69.7 128 37.5
RcHm_v2.0_Chr6g0303111 Rosa chinensis HOM05D000032 ORTHO05D006669 3.0e-10 69.7 121 38.0
Sed0016675 Sechium edule HOM05D000032 ORTHO05D006669 3.0e-10 69.7 136 36.0
Hma1.2p1_0274F.1_g110360 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 3.9e-10 69.3 121 38.8
Hma1.2p1_0274F.1_g110370 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 3.9e-10 69.3 121 38.8
HanXRQChr16g0529991 Helianthus annuus HOM05D000032 ORTHO05D006669 5.1e-10 68.9 141 35.5
GSVIVG01009935001 Vitis vinifera HOM05D000032 ORTHO05D006669 5.1e-10 68.9 136 34.6
CSS0021497 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 6.7e-10 68.6 121 38.0
CSS0023183 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 6.7e-10 68.6 121 38.0
Ciclev10000409m.g Citrus clementina HOM05D000032 ORTHO05D006669 1.1e-09 67.8 132 34.8
THA.LOC104815496 Tarenaya hassleriana HOM05D000032 ORTHO05D006669 1.5e-09 67.4 122 38.5
Atru.chr11.1620 Acer truncatum HOM05D000032 ORTHO05D006669 1.9e-09 67.0 121 38.8
Duzib093G1385 Durio zibethinus HOM05D000032 ORTHO05D006669 1.9e-09 67.0 146 32.9
Migut.C00853 Erythranthe guttata HOM05D000032 ORTHO05D006669 1.9e-09 67.0 107 40.2
Cpa.g.sc29.167 Carica papaya HOM05D000032 ORTHO05D006669 2.5e-09 66.6 132 36.4
HanXRQChr13g0412281 Helianthus annuus HOM05D000032 ORTHO05D006669 2.5e-09 66.6 142 34.5
Manes.18G012300 Manihot esculenta HOM05D000032 ORTHO05D006669 2.5e-09 66.6 121 37.2
AUR62041487 Chenopodium quinoa HOM05D000032 ORTHO05D006669 4.3e-09 65.9 121 37.2
Atru.chr13.268 Acer truncatum HOM05D000032 ORTHO05D006669 5.6e-09 65.5 121 38.0
Glyma.18G101600 Glycine max HOM05D000032 ORTHO05D006669 5.6e-09 65.5 138 33.3
TWI36G0775 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 5.6e-09 65.5 120 35.8
Lsat_1_v5_gn_8_10200 Lactuca sativa HOM05D000032 ORTHO05D006669 7.4e-09 65.1 113 37.2
Hund01599 Selenicereus undatus HOM05D000032 ORTHO05D006669 7.4e-09 65.1 145 32.4
EL10Ac1g02170 Beta vulgaris HOM05D000032 ORTHO05D006669 9.6e-09 64.7 123 39.0
Phvul.006G039100 Phaseolus vulgaris HOM05D000032 ORTHO05D006669 9.6e-09 64.7 138 33.3
Glyma.08G313100 Glycine max HOM05D000032 ORTHO05D006669 1.6e-08 63.9 138 33.3
CARHR223130 Cardamine hirsuta HOM05D000032 ORTHO05D006669 2.8e-08 63.2 125 37.6
Prupe.1G363600 Prunus persica HOM05D000032 ORTHO05D006669 2.8e-08 63.2 121 35.5
PGR042G0181 Punica granatum HOM05D000032 ORTHO05D006669 2.8e-08 63.2 106 39.6
Sc15g0004880 Simmondsia chinensis HOM05D000032 ORTHO05D006669 2.8e-08 63.2 132 34.1
Ah.00g000290 Amaranthus hybridus HOM05D000032 ORTHO05D006669 3.7e-08 62.8 139 33.1
CAN.G311.43 Capsicum annuum HOM05D000032 ORTHO05D006669 3.7e-08 62.8 110 36.4
Medtr3g049990 Medicago truncatula HOM05D000032 ORTHO05D006669 3.7e-08 62.8 156 33.3
BcaC07g38004 Brassica carinata HOM05D000032 ORTHO05D006669 4.8e-08 62.4 122 38.5
A08p12610 Brassica napus HOM05D000032 ORTHO05D006669 4.8e-08 62.4 122 38.5
BolC8t48384H Brassica oleracea HOM05D000032 ORTHO05D006669 4.8e-08 62.4 122 38.5
BraA08t33251Z Brassica rapa HOM05D000032 ORTHO05D006669 4.8e-08 62.4 122 38.5
AT4G16630 Arabidopsis thaliana HOM05D000032 ORTHO05D006669 6.2e-08 62.0 126 36.5
Nn5g30744 Nelumbo nucifera HOM05D000032 ORTHO05D006669 6.2e-08 62.0 121 36.4
VMungo0540G0072 Vigna mungo HOM05D000032 ORTHO05D006669 6.2e-08 62.0 138 32.6
Eucgr.A00214 Eucalyptus grandis HOM05D000032 ORTHO05D006669 8.1e-08 61.6 121 37.2
Thhalv10024452m.g Eutrema salsugineum HOM05D000032 ORTHO05D006669 8.1e-08 61.6 122 37.7
Gohir.D05G188600 Gossypium hirsutum HOM05D000032 ORTHO05D006669 1.1e-07 61.2 146 32.2
Gorai.009G193900 Gossypium raimondii HOM05D000032 ORTHO05D006669 1.1e-07 61.2 146 32.2
Lj6g0002233 Lotus japonicus HOM05D000032 ORTHO05D006669 1.1e-07 61.2 106 36.8
COL.COLO4_26129 Corchorus olitorius HOM05D000032 ORTHO05D006669 1.4e-07 60.8 139 32.4
Aqoxy7G02510 Aquilegia oxysepala HOM05D000032 ORTHO05D006669 2.4e-07 60.1 142 32.4
AL7G38120 Arabidopsis lyrata HOM05D000032 ORTHO05D006669 2.4e-07 60.1 122 37.7
Carub.0007s2477 Capsella rubella HOM05D000032 ORTHO05D006669 2.4e-07 60.1 122 36.9
Gohir.A05G185800 Gossypium hirsutum HOM05D000032 ORTHO05D006669 2.4e-07 60.1 142 31.7
Zm00001eb318210 Zea mays HOM05D000032 ORTHO05D006669 3.1e-07 59.7 135 36.3
MD15G1442700 Malus domestica HOM05D000032 ORTHO05D006669 4.0e-07 59.3 123 35.0
Sp7g15250 Schrenkiella parvula HOM05D000032 ORTHO05D006669 4.0e-07 59.3 137 35.8
ClCG09G010550 Citrullus lanatus HOM05D000032 ORTHO05D006669 5.3e-07 58.9 106 34.9
MELO3C003842.2 Cucumis melo HOM05D000032 ORTHO05D006669 5.3e-07 58.9 106 34.9
CsaV3_3G045070 Cucumis sativus L. HOM05D000032 ORTHO05D006669 5.3e-07 58.9 106 34.9
TAR628G0705 Trochodendron aralioides HOM05D000032 ORTHO05D006669 5.3e-07 58.9 132 34.8
Ca_14808_v3 Cicer arietinum L. HOM05D000032 ORTHO05D006669 6.9e-07 58.5 106 37.7
Os12g0481100 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D006669 6.9e-07 58.5 100 40.0
arahy.Tifrunner.gnm1.ann1.CZI2M2 Arachis hypogaea HOM05D000032 ORTHO05D006669 9.0e-07 58.2 106 35.8
MD01G1061100 Malus domestica HOM05D000032 ORTHO05D006669 9.0e-07 58.2 127 35.4
HPP92_018598 Vanilla planifolia HOM05D000032 ORTHO05D006669 1.2e-06 57.8 100 39.0
MBI05_g23391_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D006669 2.6e-06 56.6 114 35.1
Nitab4.5_0005970g0030 Nicotiana tabacum HOM05D000032 ORTHO05D006669 2.6e-06 56.6 100 37.0
BcaB07g32127 Brassica carinata HOM05D000032 ORTHO05D006669 3.4e-06 56.2 121 35.5
arahy.Tifrunner.gnm1.ann1.KG3JNQ Arachis hypogaea HOM05D000032 ORTHO05D006669 4.5e-06 55.8 106 34.9
Lalb_Chr20g0113951 Lupinus albus HOM05D000032 ORTHO05D006669 4.5e-06 55.8 121 34.7
Psat5g176240 Pisum sativum HOM05D000032 ORTHO05D006669 4.5e-06 55.8 106 35.8
Prupe.3G157600 Prunus persica HOM05D000032 ORTHO05D006669 4.5e-06 55.8 100 37.0
BraA01t01995Z Brassica rapa HOM05D000032 ORTHO05D006669 5.8e-06 55.5 137 29.2
AUR62040549 Chenopodium quinoa HOM05D000032 ORTHO05D006669 5.8e-06 55.5 51 52.9
Medtr2g041140 Medicago truncatula HOM05D000032 ORTHO05D006669 5.8e-06 55.5 121 34.7
DCAR_023755 Daucus carota HOM05D000032 ORTHO05D006669 7.6e-06 55.1 124 36.3
TPR.G11499 Trifolium pratense HOM05D000032 ORTHO05D006669 9.9e-06 54.7 106 34.9


User provided reference genes

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