Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold883G53692 Striga asiatica HOM05D000165 ORTHO05D405663 0.0e+00 1095.1 531 100.0
TPR.G31002 Trifolium pratense HOM05D000165 ORTHO05D000719 7.6e-10 69.7 43 69.8
Aqoxy7G01389 Aquilegia oxysepala HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
arahy.Tifrunner.gnm1.ann1.MY5CGZ Arachis hypogaea HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
arahy.Tifrunner.gnm1.ann1.Y7SLGU Arachis hypogaea HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
MSTRG.26387 Avicennia marina HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
CiPaw.03G223400 Carya illinoinensis HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
Duzib150G1408 Durio zibethinus HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
Gohir.A07G008900 Gossypium hirsutum HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
Gohir.D07G009200 Gossypium hirsutum HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
Gorai.001G009400 Gossypium raimondii HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
Oeu018578.1 Olea europaea HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
PGR102G0896 Punica granatum HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
Sed0009450 Sechium edule HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
GSVIVG01015290001 Vitis vinifera HOM05D000165 ORTHO05D000719 1.3e-09 68.9 34 88.2
ClCG03G016080 Citrullus lanatus HOM05D000165 ORTHO05D000719 1.7e-09 68.6 34 88.2
MELO3C015419.2 Cucumis melo HOM05D000165 ORTHO05D000719 1.7e-09 68.6 34 88.2
CsaV3_1G039880 Cucumis sativus L. HOM05D000165 ORTHO05D000719 1.7e-09 68.6 34 88.2
Migut.K00547 Erythranthe guttata HOM05D000165 ORTHO05D000719 1.7e-09 68.6 34 85.3
Phvul.002G308000 Phaseolus vulgaris HOM05D000165 ORTHO05D000719 1.7e-09 68.6 34 85.3
Sed0012672 Sechium edule HOM05D000165 ORTHO05D000719 1.7e-09 68.6 34 88.2
arahy.Tifrunner.gnm1.ann1.78LN1U Arachis hypogaea HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
arahy.Tifrunner.gnm1.ann1.SLIY4S Arachis hypogaea HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
Cfa003167 Carpinus fangiana HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 88.2
Cc06_g10570 Coffea canephora HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
Haze_25832 Corylus avellana HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 88.2
DCAR_024702 Daucus carota HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
Gohir.A06G067700 Gossypium hirsutum HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
Gohir.D06G066300 Gossypium hirsutum HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
Gorai.010G077800 Gossypium raimondii HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
Lalb_Chr05g0223291 Lupinus albus HOM05D000165 ORTHO05D000719 2.2e-09 68.2 36 83.3
Psat1g047880 Pisum sativum HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
Rhsim03G0236400 Rhododendron simsii HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
vmacro06255 Vaccinium macrocarpon HOM05D000165 ORTHO05D000719 2.2e-09 68.2 34 85.3
Ca_17369_v3 Cicer arietinum L. HOM05D000165 ORTHO05D000719 2.9e-09 67.8 34 85.3
Duzib168G1500 Durio zibethinus HOM05D000165 ORTHO05D000719 2.9e-09 67.8 34 85.3
MBI01_g10119_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D000719 2.9e-09 67.8 34 85.3
Nn6g35341 Nelumbo nucifera HOM05D000165 ORTHO05D000719 2.9e-09 67.8 34 85.3
Os01g0743200 Oryza sativa ssp. japonica HOM05D000165 ORTHO05D000719 2.9e-09 67.8 34 85.3
Solyc12g008530.2 Solanum lycopersicum HOM05D000165 ORTHO05D000719 2.9e-09 67.8 34 88.2
Sopen12g003480 Solanum pennellii HOM05D000165 ORTHO05D000719 2.9e-09 67.8 34 88.2
PGSC0003DMG400000293 Solanum tuberosum HOM05D000165 ORTHO05D000719 2.9e-09 67.8 34 88.2
TAR636G1667 Trochodendron aralioides HOM05D000165 ORTHO05D000719 2.9e-09 67.8 34 85.3
Actinidia32648 Actinidia chinensis HOM05D000165 ORTHO05D000719 3.8e-09 67.4 34 82.4
CSS0034987 Camellia sinensis var. sinensis HOM05D000165 ORTHO05D000719 3.8e-09 67.4 34 82.4
CSS0046615 Camellia sinensis var. sinensis HOM05D000165 ORTHO05D000719 3.8e-09 67.4 34 82.4
Lj4g0000336 Lotus japonicus HOM05D000165 ORTHO05D000719 3.8e-09 67.4 34 85.3
Manes.16G108100 Manihot esculenta HOM05D000165 ORTHO05D000719 3.8e-09 67.4 34 85.3
Hund26285 Selenicereus undatus HOM05D000165 ORTHO05D000719 3.8e-09 67.4 34 85.3
ATR0705G216 Amborella trichopoda HOM05D000165 ORTHO05D000719 4.9e-09 67.0 34 85.3
Cpa.g.sc860.2 Carica papaya HOM05D000165 ORTHO05D000719 4.9e-09 67.0 34 85.3
MD02G1067000 Malus domestica HOM05D000165 ORTHO05D000719 4.9e-09 67.0 34 85.3
Medtr6g088810 Medicago truncatula HOM05D000165 ORTHO05D000719 4.9e-09 67.0 34 82.4
Prupe.7G218400 Prunus persica HOM05D000165 ORTHO05D000719 4.9e-09 67.0 34 85.3
MSTRG.10600 Avicennia marina HOM05D000165 ORTHO05D000719 6.5e-09 66.6 34 85.3
CAN.G1495.21 Capsicum annuum HOM05D000165 ORTHO05D000719 6.5e-09 66.6 34 85.3
CAN.G816.24 Capsicum annuum HOM05D000165 ORTHO05D000719 6.5e-09 66.6 34 85.3
MD15G1197500 Malus domestica HOM05D000165 ORTHO05D000719 6.5e-09 66.6 34 85.3
Medtr8g102380 Medicago truncatula HOM05D000165 ORTHO05D000719 6.5e-09 66.6 34 82.4
Potri.018G068400 Populus trichocarpa HOM05D000165 ORTHO05D000719 6.5e-09 66.6 32 90.6
SEGI_20165 Sequoiadendron giganteum HOM05D000165 ORTHO05D000719 6.5e-09 66.6 34 85.3
Thecc.09G099300 Theobroma cacao HOM05D000165 ORTHO05D000719 6.5e-09 66.6 34 82.4
VMungo0251G1379 Vigna mungo HOM05D000165 ORTHO05D000719 6.5e-09 66.6 34 82.4
Ah.09g230480 Amaranthus hybridus HOM05D004751 ORTHO05D005819 8.4e-09 66.2 34 82.4
BcaC04g19368 Brassica carinata HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 79.4
C09p56470 Brassica napus HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 79.4
CANSAT56G3170 Cannabis sativa HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 82.4
FAN23G3094 Fragaria x ananassa HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 82.4
FAN26G0209 Fragaria x ananassa HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 82.4
FAN26G1888 Fragaria x ananassa HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 82.4
FAN28G1925 Fragaria x ananassa HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 82.4
Glyma.08G033000 Glycine max HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 82.4
Nn8g39049 Nelumbo nucifera HOM05D000165 ORTHO05D000719 8.4e-09 66.2 32 90.6
QL02p040966 Quercus lobata HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 82.4
RcHm_v2.0_Chr2g0092041 Rosa chinensis HOM05D000165 ORTHO05D000719 8.4e-09 66.2 34 82.4
SEGI_25432 Sequoiadendron giganteum HOM05D000165 ORTHO05D000719 8.4e-09 66.2 44 63.6
Atru.chr7.1475 Acer truncatum HOM05D000165 ORTHO05D000719 1.1e-08 65.9 34 85.3
FAN19G2169 Fragaria x ananassa HOM05D000165 ORTHO05D000719 1.1e-08 65.9 34 79.4
Lju891A0T24 Lonicera japonica HOM05D000165 ORTHO05D000719 1.1e-08 65.9 34 79.4
PSO210G2064 Papaver somniferum HOM05D000165 ORTHO05D000719 1.1e-08 65.9 34 82.4
PSO210G3903 Papaver somniferum HOM05D000165 ORTHO05D000719 1.1e-08 65.9 34 82.4
Hund09093 Selenicereus undatus HOM05D000165 ORTHO05D000719 1.1e-08 65.9 34 82.4
Ciclev10010616m.g Citrus clementina HOM05D000165 ORTHO05D000719 1.4e-08 65.5 34 82.4
Dinv36678 Davidia involucrata HOM05D000165 ORTHO05D000719 1.4e-08 65.5 36 77.8
Lj7A666G76 Lonicera japonica HOM05D000165 ORTHO05D000719 1.4e-08 65.5 34 82.4
Nn5g29216 Nelumbo nucifera HOM05D000165 ORTHO05D000719 1.4e-08 65.5 34 82.4
Oeu015816.3 Olea europaea HOM05D000165 ORTHO05D000719 1.4e-08 65.5 34 82.4
Os05g0521600 Oryza sativa ssp. japonica HOM05D000165 ORTHO05D000719 1.4e-08 65.5 34 79.4
Peaxi162Scf00944g00026 Petunia axillaris HOM05D000165 ORTHO05D000719 1.4e-08 65.5 34 82.4
Sabra18G0060600 Salix brachista HOM05D000165 ORTHO05D000719 1.4e-08 65.5 32 87.5
SalBow6G4766 Salvia bowleyana HOM05D000165 ORTHO05D000719 1.4e-08 65.5 34 82.4
Sc08g0008050 Simmondsia chinensis HOM05D000165 ORTHO05D000719 1.4e-08 65.5 34 82.4
TAR624G0923 Trochodendron aralioides HOM05D000165 ORTHO05D000719 1.4e-08 65.5 34 79.4
BcaB08g36569 Brassica carinata HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 76.5
A10p20000 Brassica napus HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 76.5
BolC9t58512H Brassica oleracea HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 76.5
BraA10t44074Z Brassica rapa HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 76.5
Carub.0006s1808 Capsella rubella HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 76.5
Thhalv10013810m.g Eutrema salsugineum HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 76.5
Glyma.01G006800 Glycine max HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 79.4
Glyma.07G125100 Glycine max HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 79.4
Nitab4.5_0000566g0210 Nicotiana tabacum HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 82.4
Nitab4.5_0003079g0070 Nicotiana tabacum HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 82.4
Sp6g24660 Schrenkiella parvula HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 76.5
Zm00001eb353540 Zea mays HOM05D000165 ORTHO05D000719 1.9e-08 65.1 34 79.4
Lj4A375T14 Lonicera japonica HOM05D000165 ORTHO05D000719 2.5e-08 64.7 34 76.5
Phvul.004G175200 Phaseolus vulgaris HOM05D000165 ORTHO05D000719 2.5e-08 64.7 34 79.4
Aa31LG1G8650 Aethionema arabicum HOM05D000165 ORTHO05D000719 3.2e-08 64.3 34 76.5
ECA234G1692 Erigeron canadensis HOM05D000165 ORTHO05D000719 3.2e-08 64.3 34 76.5
Gohir.A12G061200 Gossypium hirsutum HOM05D000165 ORTHO05D000719 3.2e-08 64.3 36 77.8
HanXRQChr10g0318901 Helianthus annuus HOM05D000165 ORTHO05D000719 3.2e-08 64.3 34 76.5
Lsat_1_v5_gn_5_145141 Lactuca sativa HOM05D000165 ORTHO05D000719 3.2e-08 64.3 34 76.5
Lj2g0026318 Lotus japonicus HOM05D000165 ORTHO05D000719 3.2e-08 64.3 34 79.4
Zm00001eb293700 Zea mays HOM05D000165 ORTHO05D000719 3.2e-08 64.3 34 79.4
AUR62010881 Chenopodium quinoa HOM05D000165 ORTHO05D000719 4.2e-08 63.9 34 79.4
AUR62021394 Chenopodium quinoa HOM05D000165 ORTHO05D000719 4.2e-08 63.9 50 60.0
Gohir.D12G061300 Gossypium hirsutum HOM05D000165 ORTHO05D000719 4.2e-08 63.9 36 75.0
Gorai.008G064400 Gossypium raimondii HOM05D000165 ORTHO05D000719 4.2e-08 63.9 36 75.0
Peaxi162Scf00083g01219 Petunia axillaris HOM05D000165 ORTHO05D000719 4.2e-08 63.9 34 79.4
MELO3C026806.2 Cucumis melo HOM05D000165 ORTHO05D000719 5.5e-08 63.5 57 54.4
DCAR_012037 Daucus carota HOM05D000165 ORTHO05D000719 5.5e-08 63.5 34 76.5
Sabra07G0012900 Salix brachista HOM05D000165 ORTHO05D000719 5.5e-08 63.5 36 75.0
BcaB05g23031 Brassica carinata HOM05D000165 ORTHO05D000719 7.1e-08 63.2 34 73.5
BcaC03g13703 Brassica carinata HOM05D000165 ORTHO05D000719 7.1e-08 63.2 34 73.5
BNapus_Darmor_BZH_scaffold_38p02180 Brassica napus HOM05D000165 ORTHO05D000719 7.1e-08 63.2 34 73.5
BolC2t06977H Brassica oleracea HOM05D000165 ORTHO05D000719 7.1e-08 63.2 34 73.5
THA.LOC104811078 Tarenaya hassleriana HOM05D000165 ORTHO05D000719 7.1e-08 63.2 34 76.5
TWI34G0207 Tripterygium wilfordii HOM05D000165 ORTHO05D000719 7.1e-08 63.2 34 76.5
Aqoxy5G01486 Aquilegia oxysepala HOM05D000165 ORTHO05D000719 9.3e-08 62.8 34 76.5
AL6G31250 Arabidopsis lyrata HOM05D000165 ORTHO05D000719 9.3e-08 62.8 34 70.6
AT5G19730 Arabidopsis thaliana HOM05D000165 ORTHO05D000719 9.3e-08 62.8 34 70.6
CARHR193170 Cardamine hirsuta HOM05D000165 ORTHO05D000719 9.3e-08 62.8 34 70.6
HPP92_024450 Vanilla planifolia HOM05D000165 ORTHO05D000719 9.3e-08 62.8 34 76.5
Zm00001eb153600 Zea mays HOM05D000165 ORTHO05D000719 9.3e-08 62.8 34 76.5
A02p05770 Brassica napus HOM05D000165 ORTHO05D000719 1.2e-07 62.4 34 73.5
BraA02t05529Z Brassica rapa HOM05D000165 ORTHO05D000719 1.2e-07 62.4 34 73.5
CSS0012170 Camellia sinensis var. sinensis HOM05D000165 ORTHO05D000719 1.2e-07 62.4 34 82.4
Dinv40060 Davidia involucrata HOM05D000165 ORTHO05D000719 1.2e-07 62.4 34 76.5
Duzib187G1886 Durio zibethinus HOM05D000165 ORTHO05D000719 1.2e-07 62.4 36 69.4
MBI05_g04843_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D000719 1.2e-07 62.4 44 63.6
Potri.007G015700 Populus trichocarpa HOM05D000165 ORTHO05D000719 1.2e-07 62.4 36 72.2
Sabra07G0012700 Salix brachista HOM05D000165 ORTHO05D000719 1.2e-07 62.4 36 72.2
CDE08G0530 Ceratophyllum demersum HOM05D000165 ORTHO05D000719 1.6e-07 62.0 34 79.4
Cc07_g10430 Coffea canephora HOM05D000165 ORTHO05D000719 2.1e-07 61.6 48 58.3
MBI04_g41166_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D000719 2.1e-07 61.6 34 76.5
MBI04_g46297_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D000719 2.1e-07 61.6 34 76.5
GSVIVG01018823001 Vitis vinifera HOM05D000165 ORTHO05D000719 2.1e-07 61.6 36 75.0
Atru.chr3.770 Acer truncatum HOM05D000165 ORTHO05D000719 2.7e-07 61.2 34 73.5
AUR62007652 Chenopodium quinoa HOM05D000165 ORTHO05D000719 2.7e-07 61.2 34 73.5
Ciclev10027321m.g Citrus clementina HOM05D000165 ORTHO05D000719 2.7e-07 61.2 36 69.4
CsaV3_4G005340 Cucumis sativus L. HOM05D000165 ORTHO05D000719 2.7e-07 61.2 57 52.6
Zm00001eb371160 Zea mays HOM05D000165 ORTHO05D000719 2.7e-07 61.2 34 70.6
Ah.03g141570 Amaranthus hybridus HOM05D000165 ORTHO05D000719 3.5e-07 60.8 34 73.5
CANSAT01G0498 Cannabis sativa HOM05D000165 ORTHO05D000719 3.5e-07 60.8 34 76.5
Nitab4.5_0000912g0010 Nicotiana tabacum HOM05D000165 ORTHO05D000719 3.5e-07 60.8 34 73.5
SGA_v2.0_scaffold47G17674 Striga asiatica HOM05D000165 ORTHO05D000719 3.5e-07 60.8 34 73.5
QL06p033961 Quercus lobata HOM05D000165 ORTHO05D000719 4.6e-07 60.5 34 76.5
SHI02654 Sapria himalayana HOM05D000165 ORTHO05D000719 6.0e-07 60.1 34 70.6
CiPaw.08G135300 Carya illinoinensis HOM05D000165 ORTHO05D000719 7.9e-07 59.7 34 73.5
ClCG07G008840 Citrullus lanatus HOM05D000165 ORTHO05D000719 7.9e-07 59.7 57 50.9
Migut.L00040 Erythranthe guttata HOM05D000165 ORTHO05D000719 7.9e-07 59.7 34 67.6
AagrBONN_evm.TU.Sc2ySwM_228.5104 Anthoceros agrestis HOM05D000165 ORTHO05D000719 1.0e-06 59.3 44 56.8
Rhsim08G0035100 Rhododendron simsii HOM05D000165 ORTHO05D000719 1.0e-06 59.3 34 73.5
SEGI_28729 Sequoiadendron giganteum HOM05D000165 ORTHO05D000719 1.0e-06 59.3 34 70.6
DCAR_017342 Daucus carota HOM05D000165 ORTHO05D000719 1.3e-06 58.9 50 54.0
Migut.J01092 Erythranthe guttata HOM05D000165 ORTHO05D000719 1.3e-06 58.9 35 65.7
Nitab4.5_0008176g0010 Nicotiana tabacum HOM05D000165 ORTHO05D000719 1.3e-06 58.9 34 70.6
MSTRG.3828 Avicennia marina HOM05D000165 ORTHO05D000719 1.8e-06 58.5 34 70.6
Oeu012303.1 Olea europaea HOM05D000165 ORTHO05D000719 1.8e-06 58.5 34 70.6
TPR.G23458 Trifolium pratense HOM05D000165 ORTHO05D000719 1.8e-06 58.5 28 85.7
CAN.G358.1 Capsicum annuum HOM05D000165 ORTHO05D000719 2.3e-06 58.2 34 73.5
Haze_03807 Corylus avellana HOM05D000165 ORTHO05D000719 2.3e-06 58.2 34 73.5
SalBow5G2737 Salvia bowleyana HOM05D000165 ORTHO05D000719 2.3e-06 58.2 34 70.6
SalBow6G5087 Salvia bowleyana HOM05D000165 ORTHO05D000719 2.3e-06 58.2 34 70.6
Cfa006942 Carpinus fangiana HOM05D000165 ORTHO05D000719 3.0e-06 57.8 34 73.5
PSO210G4368 Papaver somniferum HOM05D000165 ORTHO05D000719 3.0e-06 57.8 36 66.7
Sed0017967 Sechium edule HOM05D000165 ORTHO05D000719 3.0e-06 57.8 34 67.6
Sopen02g029180 Solanum pennellii HOM05D000165 ORTHO05D000719 3.0e-06 57.8 34 73.5
PGSC0003DMG400003623 Solanum tuberosum HOM05D000165 ORTHO05D000719 3.0e-06 57.8 34 73.5
TWI73G0779 Tripterygium wilfordii HOM05D000165 ORTHO05D000719 3.0e-06 57.8 34 73.5
vmacro22085 Vaccinium macrocarpon HOM05D000165 ORTHO05D000719 3.0e-06 57.8 34 70.6
Pp3c5_12660 Physcomitrium patens HOM05D000165 ORTHO05D000719 3.9e-06 57.4 34 64.7
Pp3c25_760 Physcomitrium patens HOM05D000165 ORTHO05D000719 5.1e-06 57.0 34 64.7
EL10As8g23849 Beta vulgaris HOM05D000165 ORTHO05D000719 6.7e-06 56.6 34 73.5
Thecc.01G319400 Theobroma cacao HOM05D000165 ORTHO05D000719 6.7e-06 56.6 36 63.9
unitig_0.g1753 Utricularia gibba HOM05D000165 ORTHO05D000719 6.7e-06 56.6 34 64.7
Solyc02g075620.4 Solanum lycopersicum HOM05D000165 ORTHO05D000719 8.7e-06 56.2 34 70.6


User provided reference genes

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