Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.9e-238 828.9 458 100.0
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 5.1e-212 741.1 460 88.7
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 1.3e-146 523.9 509 59.3
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 4.7e-125 452.2 484 59.7
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 6.8e-124 448.4 511 55.0
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.2e-123 447.6 560 51.6
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 4.4e-123 445.7 521 54.5
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 4.9e-122 442.2 462 56.5
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 4.1e-121 439.1 492 53.0
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 6.0e-120 435.3 554 50.4
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 6.0e-120 435.3 603 47.9
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 2.3e-119 433.3 580 51.2
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 5.0e-119 432.2 509 55.0
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 8.6e-119 431.4 509 50.7
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.6e-117 427.2 555 48.6
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 8.9e-116 421.4 585 49.6
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 2.0e-115 420.2 540 51.7
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 5.8e-115 418.7 508 54.1
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 2.2e-114 416.8 461 53.1
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 4.9e-114 415.6 614 43.8
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 2.7e-112 409.8 540 50.0
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 7.8e-112 408.3 470 55.3
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 7.8e-112 408.3 496 54.2
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.3e-111 407.5 566 45.9
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 5.1e-111 405.6 492 54.5
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 6.6e-111 405.2 493 51.3
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 6.6e-111 405.2 503 52.5
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 8.6e-111 404.8 500 49.8
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.9e-110 403.7 514 52.1
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.5e-110 403.3 561 48.5
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 4.3e-110 402.5 562 48.8
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.2e-109 401.0 573 45.9
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 2.1e-109 400.2 617 43.6
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 3.6e-109 399.4 546 46.9
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 1.4e-108 397.5 572 48.4
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 8.9e-108 394.8 562 45.4
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 7.6e-107 391.7 541 48.1
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 9.9e-107 391.3 545 48.6
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.3e-106 391.0 530 50.9
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.9e-106 389.8 512 52.1
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 1.4e-105 387.5 545 45.5
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 2.4e-105 386.7 502 51.0
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 7.1e-105 385.2 598 42.8
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 9.2e-105 384.8 658 42.6
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 1.6e-104 384.0 549 44.3
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.5e-104 382.9 598 44.0
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 6.0e-104 382.1 561 45.6
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 7.8e-104 381.7 495 49.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 7.3e-102 375.2 563 44.8
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.6e-101 374.0 580 42.9
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 2.1e-101 373.6 572 45.8
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 3.6e-101 372.9 575 46.1
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 3.6e-101 372.9 568 45.8
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 8.1e-101 371.7 573 45.7
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 8.1e-101 371.7 538 48.3
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 1.1e-100 371.3 518 48.6
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.8e-100 370.5 583 45.5
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.8e-100 370.5 496 50.8
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.8e-100 370.5 496 50.8
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 3.1e-100 369.8 583 44.6
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 6.9e-100 368.6 498 49.0
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 2.0e-99 367.1 510 47.6
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 4.4e-99 365.9 596 42.6
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 5.8e-99 365.5 546 44.0
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.7e-98 364.0 521 47.4
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 3.8e-98 362.8 574 43.7
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 3.8e-98 362.8 532 46.2
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 3.2e-97 359.8 532 46.4
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 4.2e-97 359.4 568 45.4
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 9.3e-97 358.2 519 48.2
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 2.7e-96 356.7 578 43.3
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 6.0e-96 355.5 615 43.6
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.0e-95 354.8 572 42.5
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.0e-95 354.8 591 41.3
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 6.6e-95 352.1 532 45.9
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.1e-94 351.3 512 48.6
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.5e-94 350.1 575 44.5
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 2.5e-94 350.1 520 43.7
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.8e-92 344.0 536 44.2
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 4.9e-90 335.9 586 41.6
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.4e-89 334.3 555 45.0
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.2e-88 331.3 488 44.1
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 7.9e-88 328.6 440 48.0
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 2.3e-87 327.0 542 45.4
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 3.0e-87 326.6 583 40.0
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 3.0e-87 326.6 490 45.5
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.1e-86 324.7 576 42.4
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.5e-86 323.6 218 70.6
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.8e-85 320.1 555 42.5
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 4.9e-82 309.3 270 60.4
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 4.9e-82 309.3 496 43.8
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.4e-81 307.8 633 40.6
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 3.5e-80 303.1 529 42.5
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.6e-77 294.3 341 49.9
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 2.3e-71 273.9 227 59.9
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.6e-69 267.7 500 44.2
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 2.0e-67 260.8 275 53.8
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 4.2e-65 253.1 148 76.4
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 2.7e-64 250.4 191 63.4
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 2.3e-63 247.3 171 71.9
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 6.7e-63 245.7 149 77.2
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 8.8e-63 245.4 591 34.9
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 8.8e-63 245.4 169 72.2
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 1.3e-61 241.5 216 57.9
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.3e-61 241.5 586 33.1
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 4.8e-61 239.6 253 54.5
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.4e-60 237.3 152 73.7
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 1.2e-59 235.0 573 36.1
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.0e-59 234.2 179 64.8
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 2.0e-59 234.2 169 66.3
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 1.7e-58 231.1 203 62.6
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 2.2e-58 230.7 476 39.5
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 6.5e-58 229.2 222 54.1
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 9.4e-57 225.3 161 65.8
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 3.6e-56 223.4 149 72.5
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 3.9e-55 219.9 226 52.2
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 3.9e-55 219.9 403 45.4
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 8.8e-55 218.8 223 52.5
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 5.9e-51 206.1 113 77.9
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 1.7e-50 204.5 113 77.0
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 3.8e-50 203.4 490 35.9
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 1.2e-48 198.4 161 62.1
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 1.8e-39 167.9 198 47.5
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 4.0e-39 166.8 401 36.2
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.2e-37 161.0 86 80.2
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.2e-37 161.0 86 80.2
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.8e-36 157.9 302 45.0
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 2.4e-36 157.5 229 40.2
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.5e-35 153.7 377 40.6
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.5e-35 153.7 377 40.6
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 5.4e-28 129.8 194 51.5
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 9.1e-28 129.0 142 57.0
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 2.0e-27 127.9 203 41.4
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 3.5e-27 127.1 152 53.3
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 4.5e-27 126.7 144 55.6
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 7.2e-25 119.4 82 67.1
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 1.6e-24 118.2 171 46.2
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 3.7e-21 107.1 217 41.9
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 1.2e-19 102.1 162 42.6
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.7e-19 100.9 56 73.2
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 7.3e-17 92.8 66 62.1
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 6.1e-16 89.7 91 58.2
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 2.3e-15 87.8 79 62.0
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 5.8e-14 83.2 124 46.8
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 9.8e-14 82.4 139 35.3
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 1.3e-13 82.0 73 61.6
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 2.4e-12 77.8 109 44.0
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 3.5e-11 73.9 107 45.8
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 6.6e-10 69.7 64 56.2
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 1.2e-06 58.9 59 52.5
Cpa.g.c30383 Carica papaya HOM05D004380 ORTHO05D005134 5.8e-06 56.6 56 58.9
Medtr4g081620 Medicago truncatula HOM05D004380 ORTHO05D005134 9.8e-06 55.8 88 46.6


User provided reference genes

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