Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1639.4 861 100.0
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1444.1 864 86.5
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1352.0 874 80.9
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1325.5 930 76.1
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1280.8 868 77.3
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1275.8 879 75.4
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1272.3 881 75.9
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1265.4 871 75.4
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1256.5 872 75.9
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1254.6 871 75.5
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1250.7 874 73.3
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1245.0 856 75.4
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1241.9 855 75.3
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1238.4 876 73.6
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1234.2 867 74.0
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1229.5 874 72.8
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 870 73.0
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1224.5 841 74.4
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1221.5 857 74.0
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 855 73.6
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 897 73.4
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1219.9 870 73.0
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1219.9 871 73.4
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1218.4 856 74.6
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1218.0 868 75.5
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1216.8 853 75.7
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1216.4 860 73.3
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1214.9 873 73.4
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1214.5 868 73.2
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1214.5 875 73.4
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 897 73.2
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1211.4 889 72.1
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1211.1 870 71.8
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1209.9 883 73.6
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1208.0 813 76.3
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1207.6 870 72.1
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1206.0 874 73.0
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1206.0 896 73.2
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1205.7 871 72.8
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1205.3 829 74.3
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1203.3 872 72.2
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1203.3 900 71.4
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1202.6 870 71.6
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 871 72.3
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 873 72.4
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 862 74.0
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1196.8 876 71.5
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1194.1 889 71.4
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1193.7 893 71.8
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 877 71.5
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1191.4 871 71.5
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 897 70.8
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 927 70.0
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1188.7 908 70.2
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1188.3 856 72.8
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1186.4 878 71.5
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 825 75.2
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 880 70.9
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1183.7 858 72.4
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1183.3 905 69.5
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1180.2 864 71.4
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1179.5 867 70.8
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1179.1 908 70.2
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1176.8 924 68.4
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 871 71.1
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 911 69.5
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1175.6 861 71.9
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1171.4 883 72.3
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1171.0 860 72.9
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1166.0 881 70.5
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1165.2 876 70.9
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 881 70.5
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 898 71.2
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1161.7 888 69.7
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1161.4 907 68.0
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1161.0 898 71.0
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 866 70.7
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1158.7 898 71.0
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 883 71.8
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1157.5 882 70.0
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1156.7 900 68.3
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1153.7 930 66.0
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1152.9 891 68.4
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 897 69.0
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1150.2 1003 63.2
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1148.7 956 66.7
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1147.9 884 69.7
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1147.1 904 67.5
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1146.3 925 67.0
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1134.0 875 68.6
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1132.1 878 67.1
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1129.4 874 70.6
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1129.0 872 71.8
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1123.2 894 70.2
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1120.9 820 72.3
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1120.1 867 69.0
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1117.1 920 64.1
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1116.7 827 69.9
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1115.5 945 66.0
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1114.4 932 64.3
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1111.7 874 68.6
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1107.4 900 66.8
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1096.3 903 66.2
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1089.7 864 68.1
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1087.0 881 66.4
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1078.2 869 64.7
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 5.9e-312 1074.3 855 66.3
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 3.4e-310 1068.1 695 81.4
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.6e-310 1067.0 821 67.7
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 3.5e-307 1058.1 757 70.5
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 1.0e-306 1056.6 841 67.3
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.2e-299 1033.1 878 62.0
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 2.5e-297 1025.4 714 73.4
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 3.7e-280 968.4 891 60.6
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 3.8e-277 958.4 711 69.8
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 8.8e-274 947.2 592 78.5
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 4.1e-271 938.3 864 57.8
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.3e-264 916.8 715 71.0
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.2e-257 893.6 505 83.4
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 7.5e-257 891.0 876 59.5
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.3e-256 890.2 873 54.8
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 4.5e-254 881.7 963 54.8
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 7.5e-249 864.4 852 56.8
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 5.9e-238 828.2 681 65.2
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 5.5e-183 645.6 627 57.9
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-176 624.4 384 77.6
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 3.2e-175 619.8 371 78.7
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 6.9e-170 602.1 341 82.7
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 6.9e-170 602.1 352 81.8
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 5.5e-167 592.4 541 63.6
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.6e-166 589.7 365 77.0
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.7e-153 545.4 463 65.2
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.7e-147 526.6 513 60.0
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 7.0e-138 495.7 703 44.0
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 7.7e-137 492.3 848 38.1
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.5e-135 487.3 1003 35.8
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.8e-125 454.5 305 73.1
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.7e-112 411.4 292 71.9
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 4.4e-108 396.7 499 50.7
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-99 368.6 428 56.1
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.0e-96 357.5 1019 30.1
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.4e-85 322.0 585 39.5
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.4e-77 295.4 353 55.0
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 8.7e-72 276.2 164 78.7
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.1e-55 222.6 327 43.1
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 4.6e-49 200.7 115 84.3
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 9.1e-45 186.4 123 85.4
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 5.9e-44 183.7 104 84.6
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 7.7e-36 156.8 106 68.9
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.2e-35 155.2 106 72.6
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 5.4e-21 107.5 78 67.9
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.0e-16 93.2 63 73.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-15 89.4 88 55.7
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.1e-13 83.2 79 62.0
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 1.8e-13 82.4 86 53.5
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 2.9e-11 75.1 59 64.4
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.8e-11 74.7 47 76.6
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 7.3e-10 70.5 53 67.9
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 6.1e-09 67.4 99 50.5
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 3.0e-08 65.1 69 43.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 5.2e-08 64.3 56 57.1
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 6.8e-08 63.9 52 61.5
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 2.6e-07 62.0 42 71.4


User provided reference genes

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