Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26422 Striga asiatica HOM05D000078 ORTHO05D000025 7.8e-103 377.1 186 100.0
Solyc01g009440.3 Solanum lycopersicum HOM05D000078 ORTHO05D000025 4.4e-13 79.0 81 49.4
Sopen01g004960 Solanum pennellii HOM05D000078 ORTHO05D000025 4.4e-13 79.0 81 49.4
CAN.G386.28 Capsicum annuum HOM05D000078 ORTHO05D000025 7.5e-13 78.2 56 62.5
PGSC0003DMG400038366 Solanum tuberosum HOM05D000078 ORTHO05D000025 1.3e-12 77.4 56 60.7
Peaxi162Scf00757g00019 Petunia axillaris HOM05D000078 ORTHO05D000025 3.7e-12 75.9 80 47.5
Nitab4.5_0025012g0010 Nicotiana tabacum HOM05D000078 ORTHO05D000025 5.4e-11 72.0 71 45.1
Cc01_g09680 Coffea canephora HOM05D000078 ORTHO05D000025 7.0e-11 71.6 52 61.5
Oeu035539.1 Olea europaea HOM05D000078 ORTHO05D000025 1.2e-10 70.9 55 67.3
Prupe.7G115900 Prunus persica HOM05D000078 ORTHO05D000025 2.7e-10 69.7 54 51.9
Manes.09G058808 Manihot esculenta HOM05D000078 ORTHO05D000025 3.5e-10 69.3 52 61.5
TAR633G0392 Trochodendron aralioides HOM05D000078 ORTHO05D000025 1.7e-09 67.0 50 60.0
Cfa016553 Carpinus fangiana HOM05D000078 ORTHO05D000025 2.3e-09 66.6 83 43.4
Rhsim01G0207300 Rhododendron simsii HOM05D000078 ORTHO05D000025 3.0e-09 66.2 52 59.6
CSS0016114 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 5.0e-09 65.5 50 60.0
Ciclev10013766m.g Citrus clementina HOM05D000078 ORTHO05D000025 5.0e-09 65.5 53 54.7
FAN02G3248 Fragaria x ananassa HOM05D000078 ORTHO05D000025 5.0e-09 65.5 54 51.9
TAR633G1406 Trochodendron aralioides HOM05D000078 ORTHO05D000025 5.0e-09 65.5 52 57.7
Duzib128G0578 Durio zibethinus HOM05D000078 ORTHO05D000025 6.6e-09 65.1 52 53.8
FvH4_6g18090 Fragaria vesca HOM05D000078 ORTHO05D000025 6.6e-09 65.1 54 51.9
FAN05G0033 Fragaria x ananassa HOM05D000078 ORTHO05D000025 6.6e-09 65.1 54 51.9
FAN05G0126 Fragaria x ananassa HOM05D000078 ORTHO05D000025 6.6e-09 65.1 54 51.9
FAN09G1671 Fragaria x ananassa HOM05D000078 ORTHO05D000025 6.6e-09 65.1 54 51.9
Lju50C21T0 Lonicera japonica HOM05D000078 ORTHO05D000025 6.6e-09 65.1 97 40.2
RcHm_v2.0_Chr3g0472361 Rosa chinensis HOM05D000078 ORTHO05D000025 6.6e-09 65.1 52 51.9
Potri.004G187001 Populus trichocarpa HOM05D000078 ORTHO05D000025 1.1e-08 64.3 52 55.8
Glyma.12G182400 Glycine max HOM05D000078 ORTHO05D000025 1.5e-08 63.9 52 55.8
PSO384G1534 Papaver somniferum HOM05D000078 ORTHO05D000025 1.5e-08 63.9 69 49.3
PSO384G2927 Papaver somniferum HOM05D000078 ORTHO05D000025 1.5e-08 63.9 69 49.3
Lju50C21T1 Lonicera japonica HOM05D000078 ORTHO05D000025 1.9e-08 63.5 52 57.7
Phvul.011G091400 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 1.9e-08 63.5 52 53.8
Potri.009G147700 Populus trichocarpa HOM05D000078 ORTHO05D000025 1.9e-08 63.5 55 56.4
Ah.08g216060 Amaranthus hybridus HOM05D000078 ORTHO05D000025 2.5e-08 63.2 50 58.0
PSO339G3877 Papaver somniferum HOM05D000078 ORTHO05D000025 2.5e-08 63.2 52 59.6
Haze_19557 Corylus avellana HOM05D000078 ORTHO05D000025 3.3e-08 62.8 52 53.8
Lju50C22T0 Lonicera japonica HOM05D000078 ORTHO05D000025 4.3e-08 62.4 52 55.8
QL01p013538 Quercus lobata HOM05D000078 ORTHO05D000025 4.3e-08 62.4 52 53.8
GSVIVG01031388001 Vitis vinifera HOM05D000078 ORTHO05D000025 4.3e-08 62.4 55 56.4
Manes.08G022000 Manihot esculenta HOM05D000078 ORTHO05D000025 5.6e-08 62.0 54 55.6
GSVIVG01033795001 Vitis vinifera HOM05D000078 ORTHO05D000025 5.6e-08 62.0 52 55.8
EL10Ac7g15780 Beta vulgaris HOM05D000078 ORTHO05D000025 7.3e-08 61.6 100 38.0
Cfa016555 Carpinus fangiana HOM05D000078 ORTHO05D000025 7.3e-08 61.6 52 51.9
Nn6g35023 Nelumbo nucifera HOM05D000078 ORTHO05D000025 7.3e-08 61.6 52 57.7
QL01p013445 Quercus lobata HOM05D000078 ORTHO05D000025 7.3e-08 61.6 52 53.8
QL01p013490 Quercus lobata HOM05D000078 ORTHO05D000025 7.3e-08 61.6 52 53.8
CSS0011295 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 9.5e-08 61.2 52 53.8
Cfa010074 Carpinus fangiana HOM05D000078 ORTHO05D000025 9.5e-08 61.2 50 56.0
Glyma.11G188200 Glycine max HOM05D000078 ORTHO05D000025 9.5e-08 61.2 50 56.0
Glyma.12G086200 Glycine max HOM05D000078 ORTHO05D000025 9.5e-08 61.2 50 56.0
Lj2P992T12 Lonicera japonica HOM05D000078 ORTHO05D000025 9.5e-08 61.2 50 56.0
Nitab4.5_0002914g0060 Nicotiana tabacum HOM05D000078 ORTHO05D000025 9.5e-08 61.2 37 70.3
Thecc.05G082900 Theobroma cacao HOM05D000078 ORTHO05D000025 1.2e-07 60.8 53 52.8
Aqoxy4G02870 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 1.6e-07 60.5 92 41.3
Hma1.2p1_0695F.1_g204440 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 2.1e-07 60.1 52 53.8
Oeu048397.1 Olea europaea HOM05D000078 ORTHO05D000025 2.1e-07 60.1 34 82.4
Glyma.13G318500 Glycine max HOM05D000078 ORTHO05D000025 2.8e-07 59.7 52 50.0
Dinv29435 Davidia involucrata HOM05D000078 ORTHO05D000025 3.6e-07 59.3 35 71.4
MD14G1017200 Malus domestica HOM05D000078 ORTHO05D000025 6.2e-07 58.5 59 44.1
TPR.G5663 Trifolium pratense HOM05D000078 ORTHO05D000025 8.0e-07 58.2 52 50.0
CiPaw.09G009500 Carya illinoinensis HOM05D000078 ORTHO05D000025 1.1e-06 57.8 57 50.9
Ca_11630_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 1.1e-06 57.8 51 51.0
Ca_30238_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 1.1e-06 57.8 51 51.0
COL.COLO4_29801 Corchorus olitorius HOM05D000078 ORTHO05D000025 1.8e-06 57.0 53 50.9
Lj5g0019619 Lotus japonicus HOM05D000078 ORTHO05D000025 1.8e-06 57.0 54 50.0
Lalb_Chr02g0155211 Lupinus albus HOM05D000078 ORTHO05D000025 1.8e-06 57.0 54 48.1
Sabra09G0113900 Salix brachista HOM05D000078 ORTHO05D000025 1.8e-06 57.0 56 53.6
Sabra09G0116400 Salix brachista HOM05D000078 ORTHO05D000025 1.8e-06 57.0 56 53.6
TPR.G23427 Trifolium pratense HOM05D000078 ORTHO05D000025 1.8e-06 57.0 109 34.9
Aqoxy2G01364 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 2.3e-06 56.6 51 54.9
Nn2g14046 Nelumbo nucifera HOM05D000078 ORTHO05D000025 2.3e-06 56.6 52 51.9
Nn2g16029 Nelumbo nucifera HOM05D000078 ORTHO05D000025 2.3e-06 56.6 52 51.9
Gohir.D04G103200 Gossypium hirsutum HOM05D000078 ORTHO05D000025 3.1e-06 56.2 54 50.0
Gorai.009G406800 Gossypium raimondii HOM05D000078 ORTHO05D000025 3.1e-06 56.2 54 50.0
Manes.11G158533 Manihot esculenta HOM05D000078 ORTHO05D000025 3.1e-06 56.2 50 50.0
Manes.11G158600 Manihot esculenta HOM05D000078 ORTHO05D000025 3.1e-06 56.2 50 50.0
Eucgr.K02069 Eucalyptus grandis HOM05D000078 ORTHO05D000025 4.0e-06 55.8 57 50.9
PGR142G3894 Punica granatum HOM05D000078 ORTHO05D000025 4.0e-06 55.8 52 48.1
arahy.Tifrunner.gnm1.ann1.GS7VU5 Arachis hypogaea HOM05D000078 ORTHO05D000025 5.2e-06 55.5 50 56.0
AUR62009807 Chenopodium quinoa HOM05D000078 ORTHO05D000025 5.2e-06 55.5 46 56.5
AUR62009806 Chenopodium quinoa HOM05D000078 ORTHO05D000025 6.8e-06 55.1 52 46.2
Gohir.A04G065414 Gossypium hirsutum HOM05D000078 ORTHO05D000025 6.8e-06 55.1 54 48.1
Phvul.005G126300 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 6.8e-06 55.1 50 54.0
QL07p040115 Quercus lobata HOM05D000078 ORTHO05D000025 6.8e-06 55.1 52 48.1
ATR0820G287 Amborella trichopoda HOM05D000078 ORTHO05D000025 8.9e-06 54.7 51 47.1
AUR62038118 Chenopodium quinoa HOM05D000078 ORTHO05D000025 8.9e-06 54.7 54 48.1
AUR62043079 Chenopodium quinoa HOM05D000078 ORTHO05D000025 8.9e-06 54.7 54 48.1
Duzib093G1151 Durio zibethinus HOM05D000078 ORTHO05D000025 8.9e-06 54.7 52 50.0
Lalb_Chr06g0173301 Lupinus albus HOM05D000078 ORTHO05D000025 8.9e-06 54.7 52 50.0
Medtr2g085015 Medicago truncatula HOM05D000078 ORTHO05D000025 8.9e-06 54.7 52 46.2
Psat6g079440 Pisum sativum HOM05D000078 ORTHO05D000025 8.9e-06 54.7 54 46.3


User provided reference genes

Program Settings