Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 2051.6 963 100.0
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1705.6 975 81.3
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1657.1 963 79.6
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1651.7 964 79.6
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1620.5 972 76.9
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1605.5 972 75.7
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1600.5 975 76.3
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1597.8 960 76.5
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1585.9 972 74.9
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1585.5 972 74.8
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1585.5 973 75.3
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 974 74.2
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1583.9 976 74.2
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1582.8 974 73.6
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1582.8 974 75.2
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1579.3 976 74.3
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1577.0 974 74.8
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 975 74.2
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1570.4 970 73.8
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1567.4 974 73.4
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1565.8 977 74.2
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1565.1 971 73.6
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1564.3 974 73.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 991 72.5
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1562.4 973 74.3
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1559.7 961 74.1
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1558.9 967 73.9
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1553.5 973 74.1
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 975 73.6
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1552.7 973 74.2
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1552.3 978 73.0
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1550.4 978 73.6
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1550.4 972 72.5
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1549.3 972 72.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1546.9 970 73.7
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1544.6 975 73.5
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1544.3 968 73.1
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1540.4 963 74.5
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 963 73.7
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 963 73.4
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1534.2 975 73.0
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1533.1 951 73.4
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1530.0 972 72.2
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1528.8 972 72.1
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1528.5 959 73.6
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1524.6 975 73.4
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1524.2 967 72.5
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 979 72.1
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1523.5 969 72.7
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1522.7 980 72.8
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 968 72.7
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 962 73.0
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 974 72.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 977 70.7
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1519.2 968 72.0
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1518.8 964 72.4
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1517.7 970 72.0
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1515.7 986 70.8
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1515.0 964 71.8
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1514.6 982 70.5
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1512.3 970 71.8
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1511.5 980 72.2
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1510.4 975 71.1
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1507.7 970 71.8
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1506.5 968 71.9
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1505.7 980 70.9
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 957 73.9
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1503.4 968 71.0
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1502.3 973 70.6
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1499.2 972 71.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1499.2 972 71.6
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1496.9 969 70.9
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1495.7 960 71.7
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1493.4 979 70.9
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1493.0 973 70.9
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 979 70.6
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 968 72.0
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1490.7 968 71.6
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1489.9 969 69.9
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1488.8 939 73.5
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1486.1 968 70.7
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1485.7 976 70.3
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1485.3 960 71.1
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1483.8 957 72.8
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1481.8 965 71.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1478.8 972 70.5
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1476.8 974 70.0
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1474.9 969 71.0
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 925 73.4
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1463.0 975 68.9
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 968 69.7
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1461.4 978 68.1
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1453.0 951 69.2
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1452.2 962 68.8
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1448.7 964 69.1
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1442.9 873 75.4
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1439.5 967 69.9
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1438.3 968 69.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1433.3 967 69.4
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1432.9 975 69.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1432.5 967 69.1
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1421.8 962 68.7
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1419.1 963 68.2
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1416.4 967 68.0
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1414.8 964 68.5
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1414.8 964 68.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1412.1 960 68.1
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1411.4 986 66.7
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1410.6 1000 67.2
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1410.2 960 67.9
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1402.5 962 67.8
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1397.9 964 68.3
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1397.1 962 67.6
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1392.5 878 72.3
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1392.1 967 67.9
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1364.4 999 63.4
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1353.2 845 72.3
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1350.1 846 72.5
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1331.2 963 65.2
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1328.9 767 77.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1323.5 776 79.4
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1300.8 964 64.9
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1275.8 967 63.6
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1241.9 839 68.2
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1208.0 777 71.9
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1195.6 764 71.2
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1177.9 783 69.7
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.3e-311 1073.2 963 54.6
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.5e-302 1040.8 677 70.8
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 2.3e-299 1032.3 950 53.3
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 4.8e-289 998.0 959 53.0
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 4.9e-281 971.5 698 65.9
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.1e-277 960.3 949 51.0
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.9e-264 916.4 957 48.7
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.9e-251 870.9 563 71.6
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 7.8e-239 831.2 847 50.3
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.6e-207 727.2 402 80.8
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 2.1e-127 461.1 286 72.7
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 3.9e-113 413.7 343 59.8
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 8.1e-111 406.0 413 50.6
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 8.1e-111 406.0 373 56.3
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 2.3e-97 361.3 213 76.1
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.5e-88 331.3 210 70.5
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 8.2e-87 326.2 192 76.6
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.5e-83 314.7 275 57.1
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.5e-72 276.6 159 75.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.2e-71 275.0 211 60.7
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 2.9e-68 264.6 701 30.2
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.2e-65 253.8 155 73.5
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.2e-64 252.7 143 76.9
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.7e-53 214.9 368 38.6
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 5.7e-48 197.2 149 66.4
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 2.1e-42 178.7 94 81.9
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.1e-41 174.9 783 23.6
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.2e-39 168.7 151 55.6
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.3e-33 148.7 89 76.4
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 3.4e-32 144.8 150 49.3
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 2.4e-30 138.7 92 70.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.2e-30 138.3 164 45.1
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 3.3e-27 128.3 88 67.0
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 4.4e-24 117.9 183 37.7
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 5.8e-24 117.5 97 51.5
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.9e-22 112.5 121 50.4
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 6.6e-20 104.0 182 34.6
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.2e-18 99.8 114 50.0
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.4e-17 96.3 325 27.1
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 4.6e-13 81.3 79 48.1
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.3e-12 79.7 118 40.7
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.6e-10 72.8 74 50.0
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 6.2e-10 70.9 44 75.0
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.1e-09 70.1 71 52.1
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 3.8e-07 61.6 78 42.3
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.2e-06 58.5 44 61.4


User provided reference genes

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