Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1984.9 1012 100.0
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1581.6 1016 80.0
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1579.3 1021 80.3
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1509.2 1023 76.6
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1394.4 1030 70.7
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1390.9 1036 70.8
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1353.6 1010 70.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1353.2 1018 69.9
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1033 68.5
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1015 69.7
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1040 68.0
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1043 68.6
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1043 68.6
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1038 67.7
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 1029 68.1
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1336.6 1039 67.9
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1331.6 1038 67.8
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1331.2 1024 68.6
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1330.5 1023 68.6
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1329.7 1029 67.7
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1329.7 1026 68.3
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1326.2 1023 68.4
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 1014 68.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1316.6 1038 67.1
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1314.7 1017 67.9
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1314.3 1034 66.5
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 1030 67.0
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1036 67.1
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1311.6 1026 67.5
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1309.3 1021 67.5
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1308.9 1042 67.1
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1308.5 1036 66.9
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 1018 67.6
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1304.3 1038 66.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1303.9 1019 67.8
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1302.7 1015 67.9
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1301.6 1004 68.6
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1301.2 1030 66.9
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1041 66.4
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1025 67.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1299.6 1013 68.0
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1299.3 1022 66.6
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1297.3 1021 67.4
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1295.8 1020 67.5
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1293.1 1024 66.7
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1292.3 1030 66.5
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1289.2 1017 67.5
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1287.3 1024 66.8
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1285.0 1026 67.2
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1284.2 1013 67.2
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1280.8 1059 65.1
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1277.7 1025 65.9
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1277.3 1025 66.6
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1276.5 1018 66.4
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1276.5 1039 65.5
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1273.8 1016 66.4
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1273.1 1031 66.2
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1271.9 1043 65.6
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1269.6 1043 65.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1269.2 1036 66.2
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1268.1 1025 65.7
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1267.7 1055 65.0
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1266.9 1026 65.9
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1266.1 1033 65.9
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1266.1 1043 65.1
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1264.6 1067 64.4
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1264.2 1024 65.9
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1263.4 1064 64.0
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1261.5 1042 65.2
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1260.7 1020 65.9
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1259.6 1016 65.6
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1259.2 1037 64.9
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1258.0 1016 65.2
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1258.0 1010 64.8
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1256.9 1024 65.8
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1255.7 1058 63.8
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1255.7 1031 65.4
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1254.2 1063 63.9
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1253.8 1049 64.7
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1245.3 1033 64.9
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1244.2 1027 64.7
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1241.1 987 66.3
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1230.7 1039 63.8
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1230.7 1040 63.8
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1222.2 1018 64.0
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1221.5 1031 62.9
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1219.1 1040 62.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1219.1 1038 62.7
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1216.4 902 70.6
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1214.1 1050 63.0
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1214.1 1048 63.4
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1210.7 1048 63.1
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1202.6 900 70.0
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1202.2 1041 62.8
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1202.2 1042 63.1
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1199.9 1037 62.9
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1196.4 1045 62.7
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1194.1 1045 61.7
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1193.7 928 67.2
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1193.3 1023 63.0
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1184.5 1012 62.9
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1183.7 1032 60.2
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1181.0 1013 62.9
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1179.9 1043 62.9
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1177.9 1043 62.9
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1177.2 1013 62.8
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1174.5 926 67.9
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1174.1 1042 62.2
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1173.3 1044 61.1
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1161.7 999 62.6
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1156.7 1050 59.8
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1152.5 1017 61.8
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1147.1 1033 61.6
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1143.6 1030 61.5
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1142.9 1025 61.4
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1140.9 1027 61.1
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1140.6 1038 61.0
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1137.1 1039 59.3
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1134.0 1014 60.7
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1129.0 1023 60.5
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1123.6 1015 60.0
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1116.7 1043 59.4
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1091.3 944 62.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1087.4 1019 58.9
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1082.4 991 59.3
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 6.9e-312 1074.3 1046 58.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.9e-297 1025.0 1033 55.3
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 6.2e-287 991.1 861 61.7
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 7.6e-269 931.0 1039 53.8
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.3e-265 919.5 991 52.8
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.6e-258 895.6 908 54.5
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 3.7e-255 885.6 838 57.8
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 9.1e-254 880.9 808 61.8
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.0e-244 850.9 995 49.5
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 8.5e-244 847.8 743 63.8
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 4.7e-242 842.0 714 64.3
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.0e-240 836.6 1042 47.8
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.5e-232 810.4 992 47.5
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.5e-229 799.3 1001 47.2
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.8e-226 789.6 1013 47.2
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 2.3e-225 786.6 676 62.7
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 4.1e-214 749.2 837 51.3
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 5.2e-209 732.3 814 52.0
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.9e-196 689.5 911 45.3
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.6e-194 684.1 714 58.3
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 3.5e-173 613.2 815 47.1
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.2e-168 598.2 628 53.8
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.7e-165 587.0 948 40.4
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.1e-148 529.6 621 49.9
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.3e-146 525.0 659 47.8
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 6.7e-140 502.7 1143 34.5
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-138 498.4 587 49.7
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-110 405.6 318 66.7
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.5e-110 404.4 644 42.4
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.2e-101 375.6 418 50.2
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 2.0e-96 358.2 266 70.7
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.7e-96 357.8 236 75.8
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.3e-90 339.0 547 41.0
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.0e-83 315.1 310 55.5
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.1e-72 278.5 701 33.2
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 3.6e-69 267.7 254 58.3
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.5e-54 219.2 1042 25.4
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.7e-45 188.0 152 57.9
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 3.4e-43 181.4 958 23.6
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.7e-42 179.1 124 70.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 9.3e-41 173.3 229 43.7
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.8e-39 169.1 176 54.5
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.8e-37 161.0 259 38.2
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.1e-36 159.8 161 55.9
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.4e-35 154.8 126 61.1
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 5.0e-34 151.0 235 43.4
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.1e-32 145.6 129 58.1
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.7e-21 108.2 113 48.7
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.5e-19 101.7 88 55.7
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 6.7e-15 87.4 63 73.0
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 6.7e-15 87.4 96 55.2


User provided reference genes

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