Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 2.1e-169 599.0 302 100.0
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.9e-146 522.7 310 86.8
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 5.5e-138 494.6 304 81.2
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 1.5e-135 486.5 307 81.1
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 2.2e-131 472.6 317 78.2
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 5.1e-128 461.5 303 77.6
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 6.7e-128 461.1 303 76.2
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 8.7e-128 460.7 306 76.5
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 7.4e-127 457.6 305 75.7
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.8e-125 453.0 304 75.3
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 4.1e-125 451.8 303 75.6
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.3e-125 451.4 303 74.6
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 9.0e-125 450.7 303 76.9
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 9.0e-125 450.7 304 75.0
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.2e-124 450.3 304 74.3
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.5e-124 449.9 304 75.0
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 2.6e-124 449.1 304 75.7
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 2.6e-124 449.1 304 73.7
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 7.2e-122 441.0 307 74.6
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.6e-121 439.9 325 70.8
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 3.6e-121 438.7 302 74.8
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.6e-121 438.7 304 72.7
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.0e-120 437.2 305 71.8
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 2.3e-120 436.0 305 72.1
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 3.9e-120 435.3 303 71.6
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 5.1e-120 434.9 322 70.2
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.1e-119 433.7 305 72.8
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.1e-119 433.7 302 72.2
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.5e-119 433.3 303 71.6
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 3.7e-118 428.7 295 71.2
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 6.3e-118 427.9 312 69.2
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 8.2e-118 427.6 306 70.9
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 2.4e-117 426.0 304 71.4
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 2.4e-117 426.0 305 69.8
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.3e-117 424.9 302 71.2
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 9.1e-117 424.1 282 74.5
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 9.1e-117 424.1 269 79.2
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.2e-116 423.7 305 69.5
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 2.0e-116 422.9 282 72.7
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 2.0e-116 422.9 293 71.7
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 2.6e-116 422.5 295 70.8
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 2.6e-116 422.5 268 79.1
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 3.4e-116 422.2 304 69.4
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 3.4e-116 422.2 358 63.1
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 4.5e-116 421.8 303 70.3
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 1.0e-115 420.6 303 70.0
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.0e-115 420.6 293 71.7
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 5.0e-115 418.3 315 68.3
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 1.1e-114 417.2 342 65.5
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.9e-114 416.4 294 71.1
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 2.5e-114 416.0 278 73.4
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 4.2e-114 415.2 306 69.3
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.5e-114 414.8 306 70.6
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.2e-113 413.7 276 76.1
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.2e-113 413.7 310 69.0
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 2.1e-113 412.9 277 72.2
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.4e-112 410.2 276 72.5
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 1.4e-112 410.2 303 68.6
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 1.8e-112 409.8 306 68.3
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 3.0e-112 409.1 304 69.1
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 6.7e-112 407.9 303 69.3
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 8.8e-112 407.5 303 69.3
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 8.8e-112 407.5 303 67.7
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.5e-111 406.8 309 68.0
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.0e-111 406.4 286 73.8
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 5.7e-111 404.8 267 75.7
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.3e-110 403.7 277 70.4
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 4.1e-109 398.7 269 75.5
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.3e-109 398.3 273 74.0
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 7.0e-109 397.9 301 66.1
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 7.0e-109 397.9 293 68.9
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 9.1e-109 397.5 301 64.8
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 1.2e-108 397.1 301 65.4
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 3.5e-108 395.6 304 66.4
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 3.5e-108 395.6 303 65.3
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 4.5e-108 395.2 301 65.8
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 4.5e-108 395.2 305 65.2
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 7.7e-108 394.4 301 65.1
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.3e-107 393.7 285 66.0
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 6.5e-107 391.3 301 64.8
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.1e-106 390.6 298 70.1
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.9e-106 389.8 309 63.8
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 7.2e-106 387.9 285 65.3
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 4.0e-104 382.1 306 63.1
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 5.2e-104 381.7 288 65.6
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.1e-103 380.6 283 65.7
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 2.0e-103 379.8 306 62.4
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 2.8e-102 375.9 300 64.7
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.8e-101 373.2 294 64.3
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 1.6e-100 370.2 259 68.0
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 2.2e-99 366.3 331 58.0
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 2.2e-99 366.3 278 65.5
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.9e-98 363.2 285 62.8
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.9e-98 363.2 331 58.0
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 9.4e-98 360.9 286 68.2
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 6.1e-97 358.2 262 71.4
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 3.4e-95 352.4 261 68.6
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 7.5e-95 351.3 255 67.1
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.7e-94 350.1 331 57.4
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.7e-94 350.1 279 65.2
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 9.1e-93 344.4 253 69.6
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.6e-92 343.6 257 66.5
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.0e-91 340.9 257 66.5
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 2.5e-90 336.3 217 77.4
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 2.7e-89 332.8 261 64.8
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 6.1e-89 331.6 272 60.3
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 3.0e-88 329.3 257 64.2
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 5.2e-88 328.6 247 68.0
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.7e-86 323.6 261 60.9
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 7.0e-85 318.2 287 58.2
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 3.5e-84 315.8 247 62.8
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.3e-83 313.9 306 58.5
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 1.2e-81 307.4 215 71.2
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 3.6e-81 305.8 224 69.2
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 4.0e-80 302.4 249 65.1
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 8.9e-80 301.2 257 63.0
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.9e-78 296.2 247 61.1
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.9e-78 295.4 268 56.3
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 4.6e-76 288.9 202 71.8
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 2.5e-66 256.5 220 63.2
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 1.2e-57 227.6 292 44.5
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.2e-55 221.1 279 45.5
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.1e-53 214.5 246 48.4
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 8.6e-51 204.9 158 67.7
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 2.9e-46 189.9 267 39.0
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 2.1e-44 183.7 143 66.4
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.0e-43 181.4 120 72.5
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 4.3e-42 176.0 265 40.8
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 4.8e-41 172.6 120 70.8
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-35 154.8 142 58.5
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.4e-32 144.4 83 83.1
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 4.5e-31 139.4 119 63.9
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 4.6e-28 129.4 83 69.9
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.9e-26 124.0 85 69.4
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-24 117.9 83 66.3
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 4.2e-21 106.3 287 28.2
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 1.9e-18 97.4 83 60.2
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.3e-17 94.7 255 29.4
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 2.8e-17 93.6 226 27.9
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 2.4e-16 90.5 256 29.3
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 4.1e-16 89.7 83 51.8
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.5e-15 87.8 153 41.2
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 3.4e-15 86.7 61 62.3
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 3.8e-14 83.2 79 54.4
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.1e-12 77.4 51 66.7
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 2.1e-12 77.4 81 53.1
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 2.7e-12 77.0 111 37.8
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 6.1e-12 75.9 200 26.5
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 7.4e-10 68.9 47 66.0
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 2.2e-09 67.4 306 24.2
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 2.8e-09 67.0 306 24.2
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 3.7e-09 66.6 63 54.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 4.1e-08 63.2 41 70.7
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 3.8e-06 56.6 232 24.6


User provided reference genes

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