Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 7.5e-135 483.8 234 100.0
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.4e-69 266.9 228 58.8
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 9.3e-69 264.2 228 59.6
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 2.7e-68 262.7 228 57.0
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.3e-67 260.4 223 57.8
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.9e-67 258.8 231 57.6
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 5.1e-67 258.5 228 58.3
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 9.6e-66 254.2 229 57.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 1.6e-65 253.4 227 56.4
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 8.1e-65 251.1 229 56.8
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 8.1e-65 251.1 231 56.3
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 8.1e-65 251.1 228 54.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.1e-64 250.8 228 53.9
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.1e-64 250.8 229 57.2
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.8e-64 250.0 229 55.9
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 3.1e-64 249.2 231 57.6
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 4.0e-64 248.8 229 55.9
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 4.0e-64 248.8 228 55.3
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 5.3e-64 248.4 230 56.1
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.5e-63 246.9 229 56.3
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 1.5e-63 246.9 227 55.9
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 2.6e-63 246.1 225 55.1
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 4.5e-63 245.4 231 55.4
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 4.5e-63 245.4 222 54.5
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.0e-62 244.2 230 55.2
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.7e-62 243.4 231 53.2
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.9e-62 242.7 231 52.8
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.9e-61 240.0 230 52.6
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.5e-61 239.6 228 54.4
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 2.5e-61 239.6 227 52.9
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 3.2e-61 239.2 231 54.1
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 3.2e-61 239.2 237 54.9
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 4.2e-61 238.8 231 54.1
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 4.2e-61 238.8 229 55.9
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 5.5e-61 238.4 231 53.2
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 7.1e-61 238.0 231 53.2
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 9.3e-61 237.7 231 53.7
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 9.3e-61 237.7 231 53.7
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 9.3e-61 237.7 225 55.1
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.1e-60 236.5 228 53.5
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.1e-60 236.5 234 53.0
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 3.5e-60 235.7 230 51.3
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 4.6e-60 235.3 229 54.6
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 6.0e-60 235.0 225 53.8
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 6.0e-60 235.0 231 53.2
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 7.9e-60 234.6 231 52.8
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 1.0e-59 234.2 225 53.3
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.0e-59 234.2 227 53.3
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.3e-59 233.8 233 53.6
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.8e-59 233.4 233 53.2
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.8e-59 233.4 236 53.0
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.8e-59 233.4 231 52.4
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.0e-59 232.6 226 51.3
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.9e-59 232.3 226 50.4
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 5.1e-59 231.9 228 52.2
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 5.1e-59 231.9 228 52.6
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 6.7e-59 231.5 227 52.4
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.1e-58 230.7 207 54.6
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.1e-58 230.7 229 53.3
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.5e-58 230.3 211 53.6
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.5e-58 230.3 231 51.5
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.5e-58 230.3 231 52.8
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.9e-58 229.9 233 53.2
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.3e-58 229.2 229 52.0
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.3e-58 229.2 229 54.1
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.3e-58 228.8 233 53.2
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.7e-58 228.4 230 51.3
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 7.4e-58 228.0 232 52.6
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 9.6e-58 227.6 225 51.6
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.3e-57 227.3 231 51.5
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.1e-57 226.5 231 50.2
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.8e-57 226.1 225 51.6
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 3.7e-57 225.7 239 48.5
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 8.2e-57 224.6 225 52.0
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.1e-56 224.2 225 51.6
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.4e-56 223.8 225 51.1
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.4e-56 223.8 202 57.4
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 3.1e-56 222.6 231 48.1
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 3.1e-56 222.6 230 54.3
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 3.1e-56 222.6 226 49.6
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 5.3e-56 221.9 226 50.0
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 6.9e-56 221.5 226 50.0
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.5e-55 220.3 228 50.9
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.5e-55 220.3 226 50.0
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.0e-55 219.9 228 51.3
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 5.9e-55 218.4 226 50.0
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 5.9e-55 218.4 226 49.6
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.6e-55 218.0 195 57.4
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.3e-54 217.2 228 52.2
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 8.5e-54 214.5 228 50.0
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 2.7e-52 209.5 225 48.9
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 5.1e-51 205.3 225 48.9
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 6.7e-51 204.9 226 48.7
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-47 194.1 229 48.5
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.2e-46 189.9 231 45.5
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 5.0e-46 188.7 225 45.8
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.4e-45 187.2 245 39.2
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 2.5e-45 186.4 236 44.5
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 3.2e-45 186.0 245 39.6
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.4e-43 180.6 224 42.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.4e-42 175.6 224 42.4
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.7e-41 173.7 257 36.6
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.7e-41 173.7 144 59.7
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 1.1e-40 171.0 235 41.7
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.8e-40 170.2 226 42.9
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.8e-40 170.2 227 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 3.8e-38 162.5 239 38.5
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 5.0e-38 162.2 235 38.7
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.4e-35 154.1 269 33.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.0e-35 152.9 255 38.4
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.9e-35 152.5 265 38.1
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.2e-35 152.1 263 37.3
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.7e-34 148.7 223 41.3
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.1e-32 144.4 241 36.1
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.1e-32 144.4 182 42.3
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.1e-32 144.4 182 42.3
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.8e-32 143.7 236 35.2
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 2.4e-32 143.3 247 35.2
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.6e-31 140.6 233 36.9
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.6e-31 140.6 227 36.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 3.5e-31 139.4 266 32.3
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 3.5e-31 139.4 246 33.7
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 7.7e-31 138.3 153 48.4
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.0e-30 137.9 263 31.6
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.3e-30 137.5 189 37.0
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.5e-30 135.2 238 36.1
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.5e-30 135.2 228 38.2
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.5e-30 135.2 239 36.4
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 8.5e-30 134.8 232 35.3
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.1e-29 134.4 229 34.1
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.5e-29 133.3 184 40.2
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 4.2e-29 132.5 223 37.7
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 7.2e-29 131.7 146 43.8
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 2.1e-28 130.2 321 28.3
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 2.1e-28 130.2 220 34.1
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.6e-28 129.4 228 37.3
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.6e-28 129.4 327 28.4
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.0e-27 125.9 327 27.8
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.3e-26 122.9 272 31.2
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.7e-26 122.1 272 31.2
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 5.7e-26 122.1 217 32.3
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 5.7e-26 122.1 211 37.0
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 9.7e-26 121.3 146 41.8
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 3.7e-25 119.4 159 40.3
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 4.8e-25 119.0 157 40.8
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.4e-24 117.5 158 37.3
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 9.1e-24 114.8 262 29.4
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 5.0e-22 109.0 257 30.0
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.9e-21 107.1 168 33.3
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.1e-20 103.6 149 34.2
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 8.0e-20 101.7 149 32.9
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.5e-18 97.4 109 45.0
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.3e-17 94.4 150 36.7
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 6.3e-17 92.0 117 45.3
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-16 90.9 226 29.6
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 1.5e-13 80.9 136 37.5
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.5e-13 80.9 206 33.5
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.1e-12 77.0 75 45.3
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.6e-12 76.3 102 36.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.0e-11 73.2 164 28.0
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.4e-08 64.3 157 28.0
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.0e-06 55.8 67 40.3
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 6.6e-06 55.5 120 33.3
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.6e-06 55.1 72 40.3


User provided reference genes

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