Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 5.5e-281 970.3 488 100.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 2.6e-166 589.3 471 62.4
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 2.8e-160 569.3 471 60.7
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.9e-156 556.6 471 59.0
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.3e-152 543.9 471 58.4
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 2.0e-150 536.6 477 56.8
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 2.6e-150 536.2 477 57.2
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 3.5e-150 535.8 477 57.2
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.3e-149 533.9 477 56.6
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 6.5e-149 531.6 472 64.0
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 8.5e-149 531.2 477 56.2
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 4.8e-144 515.4 478 56.1
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 8.2e-144 514.6 480 55.2
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 5.3e-143 511.9 501 52.9
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 2.0e-142 510.0 450 58.0
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.6e-139 499.2 481 54.5
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 1.4e-138 497.3 482 53.9
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 3.4e-137 492.7 495 51.3
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 5.7e-137 491.9 474 51.1
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 2.8e-136 489.6 480 52.1
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 7.0e-135 485.0 482 52.3
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 2.7e-134 483.0 483 52.0
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.0e-133 481.1 482 52.1
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 8.5e-133 478.0 486 52.7
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.9e-132 476.9 491 51.3
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.9e-132 476.9 505 49.7
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.9e-132 476.9 481 51.4
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 3.2e-132 476.1 491 51.9
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 3.2e-132 476.1 483 51.3
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 3.2e-132 476.1 478 53.1
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 5.5e-132 475.3 481 51.4
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 2.7e-131 473.0 485 50.5
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 2.7e-131 473.0 482 50.4
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 2.7e-131 473.0 477 52.8
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 3.6e-131 472.6 481 51.4
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 4.7e-131 472.2 480 51.2
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 4.7e-131 472.2 483 51.1
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 6.1e-131 471.9 485 50.7
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 1.8e-130 470.3 498 50.0
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 2.3e-130 469.9 483 50.9
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 2.3e-130 469.9 483 51.3
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 3.0e-130 469.5 484 51.7
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.5e-129 467.2 485 50.3
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 2.0e-129 466.8 493 50.7
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 2.0e-129 466.8 486 49.4
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 3.4e-129 466.1 484 50.6
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 4.4e-129 465.7 475 51.2
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 1.3e-128 464.2 481 51.4
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 3.7e-128 462.6 481 51.6
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 4.9e-128 462.2 478 51.0
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 4.9e-128 462.2 486 50.4
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 8.3e-128 461.5 494 48.4
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-127 460.7 483 49.3
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.8e-127 460.3 482 50.6
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 3.1e-127 459.5 483 49.9
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 3.1e-127 459.5 479 50.1
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 3.1e-127 459.5 481 49.5
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.1e-127 459.1 485 49.3
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.6e-126 457.2 485 50.1
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.7e-126 456.4 488 51.2
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 2.7e-126 456.4 487 50.3
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 3.5e-126 456.1 484 50.0
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 3.5e-126 456.1 477 50.5
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 4.5e-126 455.7 481 50.3
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 5.9e-126 455.3 483 49.7
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.9e-126 455.3 485 49.1
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.3e-125 454.1 497 48.1
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 2.9e-125 453.0 485 50.1
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 2.9e-125 453.0 477 50.7
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 2.9e-125 453.0 485 50.1
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.5e-124 450.7 483 49.5
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.5e-124 449.9 503 49.3
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.5e-124 449.9 503 49.3
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 4.3e-124 449.1 478 49.6
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.2e-123 447.6 495 48.1
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 3.6e-123 446.0 481 48.2
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 6.1e-123 445.3 480 47.7
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 1.4e-122 444.1 478 48.1
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.4e-122 444.1 479 49.1
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.3e-122 443.4 482 49.4
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.3e-122 443.4 482 47.9
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 3.4e-121 439.5 480 50.0
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 4.4e-121 439.1 483 47.0
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 4.4e-121 439.1 488 47.3
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 9.8e-121 438.0 482 49.0
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 2.9e-120 436.4 480 47.9
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 4.9e-120 435.6 480 48.1
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 3.2e-119 433.0 479 48.2
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 7.0e-119 431.8 472 50.0
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 9.2e-119 431.4 422 53.3
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 1.0e-117 427.9 487 48.5
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 5.0e-117 425.6 494 47.0
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 5.6e-116 422.2 481 46.2
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.1e-115 420.2 484 47.7
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.8e-114 417.2 485 46.0
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 5.0e-109 399.1 513 42.7
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 9.5e-108 394.8 495 45.9
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 5.2e-106 389.0 474 46.4
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.5e-105 387.5 394 51.5
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 9.8e-105 384.8 509 44.0
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.2e-102 377.9 491 40.7
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.0e-97 360.5 302 59.9
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 7.1e-95 352.1 477 43.0
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 3.3e-92 343.2 307 56.4
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.9e-79 300.8 377 42.7
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.3e-72 278.1 476 34.7
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 4.9e-72 276.2 491 35.4
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 2.1e-67 260.8 339 40.4
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.8e-66 257.7 455 34.9
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 6.7e-61 239.2 473 31.9
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 3.8e-56 223.4 262 46.2
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 2.0e-41 174.5 554 25.8
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 2.7e-38 164.1 515 25.4
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 3.7e-35 153.7 239 39.7
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 8.8e-29 132.5 154 45.5
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 5.9e-25 119.8 81 60.5
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 8.8e-21 105.9 159 38.4
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 8.8e-21 105.9 166 36.7
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 9.8e-20 102.4 92 50.0
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 9.1e-18 95.9 127 41.7
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.6e-17 95.1 86 46.5
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 7.7e-17 92.8 140 36.4
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 8.6e-16 89.4 183 29.0
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.2e-12 79.0 88 44.3
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.9e-11 73.6 54 68.5
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 4.9e-11 73.6 65 53.8
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.0e-08 65.9 112 34.8
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 2.9e-08 64.3 97 34.0
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 2.5e-07 61.2 64 46.9


User provided reference genes

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