Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 7.6e-258 893.3 436 100.0
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 3.8e-217 758.1 436 85.6
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.7e-215 751.9 436 84.9
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 1.0e-214 750.0 436 84.2
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.3e-214 748.8 436 84.4
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 3.0e-214 748.4 433 85.0
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 2.6e-213 745.3 433 84.3
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 7.5e-213 743.8 436 83.7
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.2e-212 742.3 434 84.1
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.8e-211 739.2 453 82.1
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.4e-211 738.8 436 84.6
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.1e-211 738.4 434 82.9
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 4.1e-211 738.0 436 83.3
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 4.1e-211 738.0 431 83.8
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 4.1e-211 738.0 436 83.7
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 7.0e-211 737.3 436 82.6
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 9.1e-211 736.9 436 83.7
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.7e-210 735.3 435 83.4
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 3.5e-210 734.9 436 83.0
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 4.5e-210 734.6 436 83.3
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 4.5e-210 734.6 431 83.3
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 5.9e-210 734.2 436 83.3
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 5.9e-210 734.2 433 83.6
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 7.7e-210 733.8 432 83.1
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 7.7e-210 733.8 431 83.3
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 7.7e-210 733.8 431 83.1
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 7.7e-210 733.8 431 83.1
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 7.7e-210 733.8 436 81.9
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.7e-209 732.6 437 81.9
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.7e-209 732.6 435 82.3
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 6.5e-209 730.7 431 83.5
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 8.5e-209 730.3 436 82.8
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.1e-208 729.9 433 82.4
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.1e-208 729.9 436 81.4
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.1e-208 729.9 436 82.1
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 1.5e-208 729.6 433 82.9
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.9e-208 729.2 436 82.1
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.9e-208 729.2 433 82.7
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.9e-208 729.2 433 82.9
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.2e-208 728.4 433 82.7
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 3.2e-208 728.4 436 82.1
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 3.2e-208 728.4 436 81.9
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 3.2e-208 728.4 436 82.1
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 4.2e-208 728.0 436 81.7
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 4.2e-208 728.0 436 81.9
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 4.2e-208 728.0 433 82.4
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 4.2e-208 728.0 521 72.0
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 4.2e-208 728.0 436 81.9
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 5.5e-208 727.6 433 82.9
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 5.5e-208 727.6 432 82.2
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 5.5e-208 727.6 436 81.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 7.2e-208 727.2 436 81.7
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.2e-208 727.2 433 82.9
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 7.2e-208 727.2 433 82.0
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 9.4e-208 726.9 433 82.4
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 9.4e-208 726.9 433 82.0
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 9.4e-208 726.9 433 83.1
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.2e-207 726.5 433 82.7
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.2e-207 726.5 436 81.2
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 2.1e-207 725.7 436 81.2
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 2.1e-207 725.7 436 81.2
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.1e-207 725.7 436 81.4
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.1e-207 725.7 433 81.8
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 2.1e-207 725.7 433 82.2
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.7e-207 725.3 452 80.8
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 3.6e-207 724.9 436 80.7
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 4.7e-207 724.5 436 81.9
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 4.7e-207 724.5 433 81.5
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 6.1e-207 724.2 436 80.5
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 6.1e-207 724.2 433 81.5
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 6.1e-207 724.2 433 81.8
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 8.0e-207 723.8 431 82.4
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 8.0e-207 723.8 431 82.8
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 8.0e-207 723.8 436 81.4
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.0e-206 723.4 433 81.5
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 1.0e-206 723.4 436 81.7
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.4e-206 723.0 436 81.4
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.0e-206 721.8 436 81.2
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 3.0e-206 721.8 448 80.8
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 4.0e-206 721.5 433 81.8
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 5.2e-206 721.1 436 81.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 5.2e-206 721.1 433 82.2
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 5.2e-206 721.1 436 81.2
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.2e-206 721.1 436 80.7
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 6.8e-206 720.7 433 82.4
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 6.8e-206 720.7 432 81.9
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 6.8e-206 720.7 433 82.2
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.5e-205 719.5 433 80.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.0e-205 719.2 436 80.7
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 2.6e-205 718.8 436 80.7
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 2.6e-205 718.8 436 81.0
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.6e-205 718.8 436 80.5
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 5.7e-205 717.6 433 81.8
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 9.8e-205 716.8 436 80.5
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.7e-204 716.1 436 80.5
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.2e-204 715.7 433 80.8
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.8e-204 715.3 436 78.9
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.0e-202 709.1 475 75.4
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.7e-201 706.1 437 78.3
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.7e-201 706.1 503 72.8
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.3e-201 705.7 436 78.9
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 2.3e-201 705.7 437 78.3
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 3.8e-201 704.9 423 82.0
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 8.6e-201 703.7 433 79.0
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.5e-200 703.0 436 78.4
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 2.8e-199 698.7 433 78.8
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.8e-198 696.0 432 78.5
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.3e-198 695.7 433 78.3
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.0e-198 695.3 433 78.5
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 8.9e-198 693.7 413 83.3
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.8e-196 688.7 436 78.0
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.1e-195 686.8 432 77.8
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.0e-193 680.2 410 82.2
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.7e-193 679.5 441 76.9
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.3e-193 679.1 404 82.4
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 2.3e-193 679.1 412 80.8
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 3.8e-193 678.3 479 70.8
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 1.7e-188 662.9 439 74.3
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 6.4e-188 661.0 382 84.0
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 4.6e-186 654.8 384 82.8
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 3.0e-185 652.1 405 78.5
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.5e-184 649.8 435 72.9
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 2.1e-183 646.0 384 82.3
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 2.1e-183 646.0 425 75.1
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 9.8e-181 637.1 433 74.4
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 8.6e-169 597.4 432 68.3
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 4.3e-168 595.1 431 67.1
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 9.5e-168 594.0 430 67.0
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.1e-166 590.5 419 67.3
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 7.8e-162 574.3 347 80.4
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 6.2e-159 564.7 426 65.0
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.0e-153 547.4 436 65.8
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 9.0e-150 534.3 414 67.1
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 8.4e-140 501.1 308 79.2
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.3e-137 493.8 336 75.0
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 3.9e-137 492.3 407 60.9
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.7e-124 450.3 271 82.3
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.3e-121 439.9 285 75.4
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 9.7e-120 434.5 394 56.9
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 2.8e-111 406.4 265 75.8
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 2.8e-111 406.4 411 51.1
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 5.5e-107 392.1 252 76.6
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 7.4e-104 381.7 266 71.4
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 3.0e-97 359.8 197 87.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.3e-75 286.6 439 40.1
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 6.1e-74 282.3 183 77.0
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 6.1e-74 282.3 412 42.0
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.2e-66 258.1 180 70.0
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.6e-56 223.8 124 84.7
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 9.9e-56 221.9 141 73.8
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.7e-55 221.1 140 74.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.2e-48 198.4 104 93.3
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.9e-20 103.6 58 77.6
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 7.2e-14 82.8 154 37.7


User provided reference genes

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