Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 0.0e+00 1270.8 628 100.0
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 0.0e+00 1112.8 618 87.1
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 0.0e+00 1109.7 625 86.1
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 0.0e+00 1104.7 573 95.5
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 0.0e+00 1101.3 626 84.7
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 3.3e-310 1067.8 620 83.4
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 2.3e-308 1061.6 626 82.1
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 6.6e-303 1043.5 643 80.2
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 6.1e-301 1036.9 622 79.9
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 8.0e-301 1036.6 621 79.4
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 1.0e-300 1036.2 608 80.6
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 6.8e-300 1033.5 620 79.7
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 2.0e-299 1031.9 613 80.1
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 2.9e-298 1028.1 620 79.8
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 4.9e-298 1027.3 626 78.4
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 1.1e-297 1026.2 619 79.2
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.6e-296 1022.3 619 78.8
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 5.9e-296 1020.4 620 78.7
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 1.0e-295 1019.6 619 79.3
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 3.9e-295 1017.7 623 78.2
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 3.9e-295 1017.7 617 78.8
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 2.5e-294 1015.0 617 78.6
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 9.5e-294 1013.1 617 79.3
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 2.1e-293 1011.9 620 77.7
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 2.8e-293 1011.5 621 78.3
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 1.8e-292 1008.8 621 77.3
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 5.2e-292 1007.3 625 76.8
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 8.9e-292 1006.5 624 78.0
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 8.9e-292 1006.5 620 76.8
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 2.6e-291 1005.0 619 78.4
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 5.8e-291 1003.8 626 76.8
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 9.8e-291 1003.0 625 76.8
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 1.3e-290 1002.7 598 80.8
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 3.7e-290 1001.1 624 76.6
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 8.3e-290 1000.0 596 79.2
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 4.1e-289 997.7 624 76.3
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 5.4e-289 997.3 625 75.8
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 5.4e-289 997.3 604 80.0
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 7.0e-289 996.9 616 77.4
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 9.2e-289 996.5 609 79.3
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.2e-288 996.1 618 77.2
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.0e-288 995.3 616 77.1
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 7.8e-288 993.4 626 76.2
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 1.0e-287 993.0 666 72.8
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 2.3e-287 991.9 625 77.6
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 5.0e-287 990.7 605 77.9
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 8.6e-287 989.9 575 80.9
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 1.1e-286 989.6 624 75.5
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 1.5e-286 989.2 595 78.5
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 1.9e-286 988.8 614 77.5
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 2.5e-286 988.4 636 75.3
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 3.3e-286 988.0 625 75.7
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 9.5e-286 986.5 625 76.3
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 6.2e-285 983.8 605 77.4
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 1.4e-284 982.6 624 75.2
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 2.0e-283 978.8 615 78.2
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 2.0e-283 978.8 643 74.2
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.4e-283 978.0 610 76.4
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 1.3e-282 976.1 630 76.3
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 1.7e-282 975.7 614 75.7
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 1.1e-281 973.0 626 74.4
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 1.4e-281 972.6 626 74.4
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 1.4e-281 972.6 603 76.1
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 1.9e-281 972.2 614 75.9
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 3.2e-281 971.5 607 75.0
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 3.2e-281 971.5 608 75.7
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 7.1e-281 970.3 608 76.5
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 7.1e-281 970.3 601 76.0
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 1.2e-280 969.5 630 74.1
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 1.2e-280 969.5 612 75.3
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 2.7e-280 968.4 603 75.6
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 2.7e-280 968.4 621 74.6
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 1.0e-279 966.5 601 77.2
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 1.7e-279 965.7 621 74.2
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 1.7e-279 965.7 621 74.2
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 5.1e-279 964.1 612 75.7
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 1.9e-278 962.2 630 74.1
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 2.5e-278 961.8 626 73.5
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 4.3e-278 961.1 601 76.4
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 5.6e-278 960.7 618 73.9
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 3.6e-277 958.0 637 72.7
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 1.1e-276 956.4 601 76.0
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 2.4e-276 955.3 648 71.8
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 3.1e-276 954.9 606 75.6
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 4.0e-276 954.5 601 75.9
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 6.8e-276 953.7 598 76.3
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 1.5e-275 952.6 620 73.7
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 2.6e-275 951.8 601 75.9
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 3.4e-275 951.4 603 75.1
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 4.9e-274 947.6 624 74.2
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 6.4e-274 947.2 643 71.7
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 8.4e-274 946.8 592 76.0
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 7.1e-273 943.7 648 71.0
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 1.6e-269 932.6 620 71.5
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 1.6e-269 932.6 607 74.0
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 3.1e-268 928.3 617 72.8
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 7.6e-267 923.7 575 78.4
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 7.8e-264 913.7 621 71.2
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.7e-263 912.5 631 70.5
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 3.0e-263 911.8 567 76.5
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 1.9e-262 909.1 600 73.5
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.2e-259 899.8 575 76.0
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 9.9e-259 896.7 614 69.5
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 4.9e-258 894.4 609 69.8
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 2.5e-254 882.1 637 69.2
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 5.6e-254 880.9 549 77.2
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 1.8e-252 875.9 548 76.8
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 1.7e-250 869.4 555 76.0
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 1.7e-250 869.4 555 76.0
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 3.8e-250 868.2 580 72.2
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 9.3e-249 863.6 617 68.6
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 6.0e-248 860.9 513 79.3
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 1.5e-243 846.3 613 69.2
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 1.2e-240 836.6 490 83.1
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 4.8e-237 824.7 577 70.9
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 2.9e-234 815.5 512 75.8
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 1.1e-233 813.5 620 64.7
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 5.3e-228 794.7 585 65.5
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 1.0e-226 790.4 605 63.0
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 6.5e-226 787.7 600 64.2
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 6.3e-221 771.2 986 45.4
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 1.0e-218 763.8 465 78.3
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 3.5e-211 738.8 586 63.7
AUR62013440 Chenopodium quinoa HOM05D004195 ORTHO05D005309 8.0e-208 727.6 432 79.2
Gohir.A02G111000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.3e-202 710.3 421 78.4
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 5.2e-199 698.4 642 57.2
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 1.7e-178 630.2 606 55.0
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 2.3e-175 619.8 608 52.5
AagrBONN_evm.TU.Sc2ySwM_228.475 Anthoceros agrestis HOM05D004195 ORTHO05D005309 6.8e-167 591.7 427 66.7
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 3.2e-164 582.8 512 58.2
Dinv27262 Davidia involucrata HOM05D004195 ORTHO05D005309 1.6e-163 580.5 335 80.9
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 4.7e-160 568.9 603 51.1
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 8.4e-157 558.1 377 71.4
Zm00001eb272890 Zea mays HOM05D004195 ORTHO05D005309 1.4e-156 557.4 339 76.7
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.1e-153 547.7 522 56.7
Manes.02G169300 Manihot esculenta HOM05D004195 ORTHO05D005309 3.3e-145 519.6 354 70.6
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 1.0e-117 428.3 538 44.1
CDE06G0343 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 1.2e-115 421.4 269 72.5
Sed0024885 Sechium edule HOM05D004195 ORTHO05D005309 7.4e-113 412.1 273 71.8
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 4.2e-108 396.4 305 63.3
Gohir.D02G077650 Gossypium hirsutum HOM05D004195 ORTHO05D005309 9.4e-108 395.2 421 52.7
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.7e-101 374.4 271 66.4
Zm00001eb215830 Zea mays HOM05D004195 ORTHO05D005309 1.4e-100 371.3 213 81.7
Dinv27263 Davidia involucrata HOM05D004195 ORTHO05D005309 7.5e-81 305.8 201 77.1
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 4.1e-79 300.1 380 46.6
Sopen04g025970 Solanum pennellii HOM05D004195 ORTHO05D005309 3.0e-74 283.9 185 74.6
Zm00001eb237030 Zea mays HOM05D004195 ORTHO05D005309 2.2e-72 277.7 151 85.4
AUR62013439 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.3e-69 268.5 187 70.6
HPP92_009371 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.3e-48 198.7 127 72.4
Lsat_1_v5_gn_6_45121 Lactuca sativa HOM05D004195 ORTHO05D035846 8.3e-48 196.1 262 43.5
Sed0012376 Sechium edule HOM05D004195 ORTHO05D005309 7.1e-47 193.0 150 66.7
Lsat_1_v5_gn_6_43121 Lactuca sativa HOM05D004195 ORTHO05D005309 1.5e-44 185.3 269 43.9
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 2.2e-40 171.4 403 30.5
Cpa.g.c44850 Carica papaya HOM05D004195 ORTHO05D005309 1.4e-34 152.1 107 70.1
Gohir.D08G239084 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.4e-34 151.4 114 68.4
FAN15G2766 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.3e-29 135.6 109 55.0
Ah.04g163400 Amaranthus hybridus HOM05D004195 ORTHO05D005309 8.7e-29 132.9 102 63.7
Hund26746 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.4e-26 125.6 114 59.6
Duzib213G0704 Durio zibethinus HOM05D004195 ORTHO05D005309 4.5e-25 120.6 78 71.8
VMungo0720G0521 Vigna mungo HOM05D000196 ORTHO05D000279 1.4e-23 115.5 84 61.9
QL10p065861 Quercus lobata HOM05D001716 ORTHO05D004234 2.1e-22 111.7 56 91.1
vmacro11216 Vaccinium macrocarpon HOM05D004195 ORTHO05D050721 1.4e-18 99.0 73 65.8
Hma1.2p1_0349F.1_g132280 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 3.1e-18 97.8 69 60.9
Hund26745 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.3e-16 92.4 67 64.2
PGR004G1431 Punica granatum HOM05D003927 ORTHO05D004905 5.5e-15 87.0 238 30.7
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 9.3e-15 86.3 74 55.4
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 1.2e-14 85.9 294 26.5
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 1.6e-14 85.5 326 29.4
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 2.1e-14 85.1 323 28.5
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 7.9e-14 83.2 219 31.1
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.3e-13 81.6 230 23.0
FAN26G1170 Fragaria x ananassa HOM05D004195 ORTHO05D035846 3.3e-12 77.8 37 89.2
Gohir.D07G155733 Gossypium hirsutum HOM05D004195 ORTHO05D217344 3.1e-10 71.2 42 76.2
Hma1.2p1_2689F.1_g326990 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 4.1e-10 70.9 58 51.7
MBI11_g47560_MAGBIO Magnolia biondii HOM05D002408 ORTHO05D002534 6.9e-10 70.1 45 71.1
QL05p063882 Quercus lobata HOM05D001716 ORTHO05D004234 1.5e-09 68.9 35 88.6
RcHm_v2.0_Chr3g0470721 Rosa chinensis HOM05D004195 ORTHO05D050721 4.5e-09 67.4 39 79.5
HPP92_005821 Vanilla planifolia HOM05D004195 ORTHO05D429708 3.8e-08 64.3 107 36.4
MBI15_g02237_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D011926 2.5e-07 61.6 44 70.5
Lsat_1_v5_gn_9_125000 Lactuca sativa HOM05D004195 ORTHO05D005309 7.2e-07 60.1 72 44.4
Mapoly0072s0036 Marchantia polymorpha HOM05D001733 ORTHO05D001882 9.3e-07 59.7 163 31.3
Lsat_1_v5_gn_3_55481 Lactuca sativa HOM05D002352 ORTHO05D011576 3.5e-06 57.8 32 75.0


User provided reference genes

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