Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 6.0e-181 637.5 349 100.0
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.3e-122 443.7 349 74.8
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.4e-116 423.7 349 66.8
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 4.1e-113 412.1 343 67.6
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 8.3e-106 387.9 311 70.4
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 7.0e-105 384.8 287 67.9
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.3e-103 380.6 290 70.7
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.3e-103 380.6 286 70.6
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 2.3e-103 379.8 290 70.3
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.0e-103 379.4 291 70.1
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 1.1e-102 377.5 339 65.8
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.5e-102 377.1 278 70.9
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.5e-102 377.1 307 66.8
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.5e-102 376.3 320 64.7
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 4.3e-102 375.6 286 71.0
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 3.6e-101 372.5 338 65.4
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 3.6e-101 372.5 350 60.6
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.1e-100 370.9 350 63.7
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.1e-100 370.9 282 67.4
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.1e-100 370.9 306 64.1
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.4e-100 370.5 330 60.6
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 3.1e-100 369.4 320 66.2
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 6.8e-100 368.2 332 63.9
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.2e-99 367.5 317 62.8
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.2e-99 367.5 329 60.2
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 2.0e-99 366.7 301 62.5
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 2.6e-99 366.3 321 66.7
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 5.8e-99 365.2 343 58.9
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 7.5e-99 364.8 305 66.6
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.7e-98 363.6 268 71.3
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.2e-98 363.2 299 65.2
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 4.9e-98 362.1 296 63.2
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 4.9e-98 362.1 323 60.7
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 6.4e-98 361.7 332 58.1
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 8.3e-98 361.3 327 60.6
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 2.4e-97 359.8 325 60.6
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.2e-97 359.4 340 62.4
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 5.4e-97 358.6 319 61.4
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.7e-96 356.3 348 62.9
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 7.8e-96 354.8 306 65.0
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.0e-95 354.4 287 69.0
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.1e-94 350.9 323 60.1
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.1e-94 350.9 309 64.7
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.1e-94 350.9 310 63.9
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 2.5e-94 349.7 306 63.1
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 5.6e-94 348.6 289 69.2
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 7.3e-94 348.2 274 68.6
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 9.5e-94 347.8 346 57.8
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.2e-93 347.4 271 66.4
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.1e-93 346.7 275 64.7
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 3.6e-93 345.9 257 68.1
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 8.1e-93 344.7 317 61.5
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.9e-90 336.3 275 62.9
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.9e-90 336.3 307 66.4
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 2.9e-90 336.3 276 64.5
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 3.8e-90 335.9 254 65.7
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 4.9e-90 335.5 330 60.0
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.9e-90 335.5 275 64.4
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 4.9e-90 335.5 305 61.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.4e-89 334.0 281 66.5
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.9e-89 333.6 331 58.9
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.7e-87 327.0 298 61.4
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.3e-87 326.6 308 59.4
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 3.0e-87 326.2 279 62.0
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 3.0e-87 326.2 275 67.3
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.5e-86 323.2 286 65.0
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 6.2e-85 318.5 253 63.6
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 3.1e-84 316.2 329 60.5
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 5.2e-84 315.5 284 66.5
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.2e-84 315.5 381 51.4
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 6.9e-84 315.1 247 68.8
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.5e-83 313.9 295 62.4
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.6e-83 313.2 286 59.4
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 9.9e-83 311.2 334 54.5
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.3e-82 310.8 286 62.2
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.7e-82 310.5 304 62.8
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.7e-82 310.5 207 72.5
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 2.2e-82 310.1 266 68.4
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.9e-82 309.7 310 58.1
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 8.4e-82 308.1 207 72.0
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.4e-81 306.6 326 59.2
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 7.1e-81 305.1 326 58.9
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.0e-79 301.2 301 60.8
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.0e-79 301.2 266 63.5
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 2.3e-79 300.1 266 66.9
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 5.1e-79 298.9 277 58.1
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.1e-78 297.7 286 56.6
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.9e-78 297.0 287 58.9
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 2.5e-78 296.6 253 66.0
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 5.6e-78 295.4 310 58.1
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 7.3e-78 295.0 305 53.8
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 9.6e-78 294.7 266 66.2
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 9.6e-78 294.7 266 66.2
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.1e-77 293.5 266 65.8
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 6.2e-77 292.0 266 65.8
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 6.2e-77 292.0 266 65.8
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 8.1e-77 291.6 296 57.8
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 1.2e-75 287.7 297 57.9
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.2e-75 287.7 297 57.9
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.5e-75 285.8 325 54.5
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 2.2e-74 283.5 271 57.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.1e-73 281.2 281 61.6
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.8e-71 273.9 286 59.4
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 3.9e-71 272.7 233 58.4
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 5.1e-71 272.3 247 61.1
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.3e-69 267.7 305 55.7
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 2.8e-69 266.5 297 57.2
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.1e-68 263.1 201 65.7
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 4.2e-65 252.7 274 53.6
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 4.6e-64 249.2 257 61.1
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.5e-62 244.2 279 54.8
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.5e-62 243.4 269 50.2
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.3e-54 216.1 231 47.2
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 7.4e-54 215.3 137 77.4
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 5.3e-52 209.1 324 41.0
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.2e-50 203.8 266 53.4
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.9e-49 200.7 265 48.3
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 6.9e-44 182.2 177 58.2
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 3.4e-43 179.9 135 62.2
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 4.7e-40 169.5 248 41.5
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.3e-37 161.4 171 51.5
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 2.6e-35 153.7 177 44.6
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.0e-34 149.4 334 33.5
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.4e-33 147.9 92 79.3
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.4e-33 147.9 94 77.7
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 7.4e-30 135.6 163 58.9
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-22 110.5 250 28.4
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.6e-22 110.5 129 48.1
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 4.4e-22 109.8 67 79.1
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.1e-20 105.1 196 33.7
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.7e-18 97.8 143 42.0
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.7e-16 89.7 237 31.6
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.4e-12 78.2 212 28.8
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 7.0e-12 75.9 91 51.6
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.5e-09 68.2 218 29.8
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.9e-09 67.8 54 64.8
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 4.7e-08 63.2 98 30.6
MCO02G422 Micromonas commoda HOM05D005493 ORTHO05D269126 4.4e-06 56.6 192 24.5


User provided reference genes

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