Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03576 Striga asiatica HOM05D006918 ORTHO05D008525 7.5e-210 734.2 551 100.0
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 2.1e-39 167.9 233 41.2
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 6.9e-38 162.9 234 43.6
AL2G39540 Arabidopsis lyrata HOM05D006918 ORTHO05D008525 4.5e-37 160.2 234 41.0
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 5.8e-37 159.8 234 41.5
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 9.9e-37 159.1 235 41.7
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 6.4e-36 156.4 234 41.0
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 2.4e-35 154.5 231 41.6
AT1G79080 Arabidopsis thaliana HOM05D006918 ORTHO05D008525 4.2e-35 153.7 234 50.0
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 7.1e-35 152.9 230 40.9
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 7.1e-35 152.9 231 41.1
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 7.1e-35 152.9 230 40.9
Migut.M01563 Erythranthe guttata HOM05D006918 ORTHO05D008525 7.1e-35 152.9 572 53.1
MSTRG.7057 Avicennia marina HOM05D006918 ORTHO05D008525 3.2e-27 127.5 400 59.8
TAR636G1403 Trochodendron aralioides HOM05D006918 ORTHO05D008525 6.7e-25 119.8 523 44.7
BcaC08g47471 Brassica carinata HOM05D006918 ORTHO05D008525 5.6e-24 116.7 202 38.6
Oeu056983.1 Olea europaea HOM05D006918 ORTHO05D008525 2.1e-23 114.8 400 59.0
BcaB02g08665 Brassica carinata HOM05D006918 ORTHO05D008525 2.4e-22 111.3 139 46.0
BcaNung04908 Brassica carinata HOM05D006918 ORTHO05D008525 2.4e-22 111.3 139 46.0
Peaxi162Scf00452g00086 Petunia axillaris HOM05D006918 ORTHO05D008525 6.9e-22 109.8 416 56.7
Nitab4.5_0001749g0050 Nicotiana tabacum HOM05D006918 ORTHO05D008525 1.2e-21 109.0 414 56.5
Aa31LG4G1910 Aethionema arabicum HOM05D001696 ORTHO05D001746 4.5e-21 107.1 229 31.9
Cc05_g15990 Coffea canephora HOM05D006918 ORTHO05D008525 8.4e-20 102.8 103 53.4
Nn7g37872 Nelumbo nucifera HOM05D006918 ORTHO05D008525 1.4e-19 102.1 96 55.2
CSS0032788 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 1.9e-19 101.7 98 54.1
SalBow8G1439 Salvia bowleyana HOM05D006918 ORTHO05D008525 2.5e-19 101.3 86 60.5
Nitab4.5_0008437g0030 Nicotiana tabacum HOM05D006918 ORTHO05D008525 5.5e-19 100.1 106 50.9
PGSC0003DMG400022129 Solanum tuberosum HOM05D006918 ORTHO05D008525 7.1e-19 99.8 400 57.0
Dinv19625 Davidia involucrata HOM05D006918 ORTHO05D008525 3.5e-18 97.4 95 53.7
Dinv42519 Davidia involucrata HOM05D006918 ORTHO05D008525 6.0e-18 96.7 65 67.7
Lj3g0009186 Lotus japonicus HOM05D006918 ORTHO05D008525 1.0e-17 95.9 84 58.3
MD10G1198700 Malus domestica HOM05D006918 ORTHO05D008525 1.0e-17 95.9 111 48.6
TAR627G0890 Trochodendron aralioides HOM05D006918 ORTHO05D008525 1.8e-17 95.1 95 50.5
Prupe.4G143000 Prunus persica HOM05D006918 ORTHO05D008525 2.3e-17 94.7 100 50.0
Lsat_1_v5_gn_7_72161 Lactuca sativa HOM05D006918 ORTHO05D008525 3.0e-17 94.4 73 60.3
PSO541G4556 Papaver somniferum HOM05D006918 ORTHO05D008525 3.0e-17 94.4 89 51.7
Thecc.07G154400 Theobroma cacao HOM05D006918 ORTHO05D008525 5.1e-17 93.6 92 51.1
CSS0007445 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 6.7e-17 93.2 74 56.8
CSS0011318 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 6.7e-17 93.2 74 56.8
Ca_03688_v3 Cicer arietinum L. HOM05D006918 ORTHO05D008525 6.7e-17 93.2 86 51.2
PSO675G9078 Papaver somniferum HOM05D006918 ORTHO05D008525 8.7e-17 92.8 89 50.6
Potri.011G144300 Populus trichocarpa HOM05D006918 ORTHO05D008525 1.1e-16 92.4 106 48.1
Sabra11G0128500 Salix brachista HOM05D006918 ORTHO05D008525 1.1e-16 92.4 91 53.8
Sopen07g034560 Solanum pennellii HOM05D006918 ORTHO05D008525 1.1e-16 92.4 62 66.1
Ah.04g163440 Amaranthus hybridus HOM05D006918 ORTHO05D008525 1.5e-16 92.0 96 47.9
Sc03g0007940 Simmondsia chinensis HOM05D006918 ORTHO05D008525 1.9e-16 91.7 74 55.4
Solyc07g066390.1 Solanum lycopersicum HOM05D006918 ORTHO05D008525 1.9e-16 91.7 99 48.5
CiPaw.12G045100 Carya illinoinensis HOM05D006918 ORTHO05D008525 2.5e-16 91.3 96 50.0
Haze_08532 Corylus avellana HOM05D006918 ORTHO05D008525 2.5e-16 91.3 96 50.0
Potri.001G457300 Populus trichocarpa HOM05D006918 ORTHO05D008525 2.5e-16 91.3 91 51.6
ClCG11G016340 Citrullus lanatus HOM05D006918 ORTHO05D008525 4.3e-16 90.5 106 49.1
Gohir.D05G330400 Gossypium hirsutum HOM05D006918 ORTHO05D008525 4.3e-16 90.5 66 59.1
Gorai.009G354800 Gossypium raimondii HOM05D006918 ORTHO05D008525 4.3e-16 90.5 66 59.1
CAN.G943.32 Capsicum annuum HOM05D006918 ORTHO05D008525 5.7e-16 90.1 99 46.5
AUR62043059 Chenopodium quinoa HOM05D006918 ORTHO05D008525 5.7e-16 90.1 89 49.4
AUR62044624 Chenopodium quinoa HOM05D006918 ORTHO05D008525 5.7e-16 90.1 89 49.4
QL04p074473 Quercus lobata HOM05D006918 ORTHO05D008525 5.7e-16 90.1 96 50.0
Cfa019933 Carpinus fangiana HOM05D006918 ORTHO05D008525 7.4e-16 89.7 115 46.1
VMungo1080G0996 Vigna mungo HOM05D006918 ORTHO05D008525 7.4e-16 89.7 91 48.4
Cfa019430 Carpinus fangiana HOM05D006918 ORTHO05D008525 9.7e-16 89.4 96 49.0
MD05G1216400 Malus domestica HOM05D006918 ORTHO05D008525 9.7e-16 89.4 87 51.7
Lalb_Chr25g0285091 Lupinus albus HOM05D006918 ORTHO05D008525 1.3e-15 89.0 72 59.7
EL10Ac4g08564 Beta vulgaris HOM05D006918 ORTHO05D008525 2.2e-15 88.2 87 48.3
Glyma.08G172400 Glycine max HOM05D006918 ORTHO05D008525 2.8e-15 87.8 91 49.5
Phvul.005G056300 Phaseolus vulgaris HOM05D006918 ORTHO05D008525 2.8e-15 87.8 91 47.3
RcHm_v2.0_Chr5g0026921 Rosa chinensis HOM05D006918 ORTHO05D008525 2.8e-15 87.8 83 50.6
Sabra16G0310000 Salix brachista HOM05D006918 ORTHO05D008525 2.8e-15 87.8 74 55.4
Glyma.15G254900 Glycine max HOM05D006918 ORTHO05D008525 3.7e-15 87.4 91 49.5
CDE04G0465 Ceratophyllum demersum HOM05D006918 ORTHO05D008525 4.8e-15 87.0 66 57.6
MELO3C010560.2 Cucumis melo HOM05D006918 ORTHO05D008525 4.8e-15 87.0 105 46.7
CsaV3_4G031810 Cucumis sativus L. HOM05D006918 ORTHO05D008525 6.3e-15 86.7 105 47.6
FAN16G1729 Fragaria x ananassa HOM05D006918 ORTHO05D008525 6.3e-15 86.7 68 58.8
FAN21G2086 Fragaria x ananassa HOM05D006918 ORTHO05D008525 6.3e-15 86.7 82 52.4
FAN21G2559 Fragaria x ananassa HOM05D006918 ORTHO05D008525 6.3e-15 86.7 82 52.4
Manes.14G015600 Manihot esculenta HOM05D006918 ORTHO05D008525 6.3e-15 86.7 96 45.8
Duzib187G0932 Durio zibethinus HOM05D006918 ORTHO05D008525 8.2e-15 86.3 75 53.3
Duzib187G1351 Durio zibethinus HOM05D006918 ORTHO05D008525 8.2e-15 86.3 75 53.3
FvH4_3g15990 Fragaria vesca HOM05D006918 ORTHO05D008525 8.2e-15 86.3 82 52.4
FAN11G3197 Fragaria x ananassa HOM05D006918 ORTHO05D008525 8.2e-15 86.3 82 52.4
Lalb_Chr01g0007081 Lupinus albus HOM05D006918 ORTHO05D008525 8.2e-15 86.3 93 49.5
Lalb_Chr19g0133401 Lupinus albus HOM05D006918 ORTHO05D008525 8.2e-15 86.3 92 48.9
DCAR_016820 Daucus carota HOM05D006918 ORTHO05D008525 1.1e-14 85.9 88 52.3
TPR.G9758 Trifolium pratense HOM05D006918 ORTHO05D008525 1.4e-14 85.5 74 52.7
Aqoxy6G01201 Aquilegia oxysepala HOM05D006918 ORTHO05D008525 1.8e-14 85.1 78 52.6
Lj5C202T5 Lonicera japonica HOM05D006918 ORTHO05D008525 1.8e-14 85.1 109 42.2
Medtr2g069680 Medicago truncatula HOM05D006918 ORTHO05D008525 1.8e-14 85.1 86 47.7
FAN25G3485 Fragaria x ananassa HOM05D006918 ORTHO05D008525 4.1e-14 84.0 83 49.4
CANSAT56G0998 Cannabis sativa HOM05D006918 ORTHO05D008525 5.3e-14 83.6 101 44.6
DCAR_013746 Daucus carota HOM05D006918 ORTHO05D008525 6.9e-14 83.2 73 50.7
HanXRQChr05g0161001 Helianthus annuus HOM05D006918 ORTHO05D008525 6.9e-14 83.2 97 43.3
Sed0019951 Sechium edule HOM05D006918 ORTHO05D008525 6.9e-14 83.2 96 46.9
Cpa.g.sc10.35 Carica papaya HOM05D006918 ORTHO05D008525 9.0e-14 82.8 95 46.3
TPR.G9735 Trifolium pratense HOM05D006918 ORTHO05D008525 9.0e-14 82.8 66 56.1
Atru.chr12.2189 Acer truncatum HOM05D006918 ORTHO05D008525 1.5e-13 82.0 68 52.9
Eucgr.F03183 Eucalyptus grandis HOM05D006918 ORTHO05D008525 1.5e-13 82.0 104 43.3
TWI39G1081 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 7.7e-13 79.7 83 44.6
Psat1g002800 Pisum sativum HOM05D006918 ORTHO05D008525 1.3e-12 79.0 74 47.3
Lj5A202T40 Lonicera japonica HOM05D006918 ORTHO05D008525 1.1e-11 75.9 85 44.7
TPR.G9740 Trifolium pratense HOM05D006918 ORTHO05D008525 1.1e-11 75.9 69 49.3
TWI38G1170 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 2.7e-10 71.2 86 40.7
Lj5C202T3 Lonicera japonica HOM05D006918 ORTHO05D008525 4.6e-10 70.5 164 32.9
ATR1098G023 Amborella trichopoda HOM05D006918 ORTHO05D008525 1.4e-09 68.9 41 75.6
Rhsim04G0005900 Rhododendron simsii HOM05D006918 ORTHO05D008525 1.4e-09 68.9 73 42.5
CDE12G0330 Ceratophyllum demersum HOM05D006918 ORTHO05D008525 8.8e-09 66.2 87 47.1
HPP92_013913 Vanilla planifolia HOM05D006918 ORTHO05D008525 1.1e-08 65.9 106 42.5
HPP92_013983 Vanilla planifolia HOM05D006918 ORTHO05D008525 1.1e-08 65.9 97 38.1
Ciclev10019503m.g Citrus clementina HOM05D006918 ORTHO05D008525 5.7e-08 63.5 87 41.4
BcaC08g47472 Brassica carinata HOM05D006918 ORTHO05D008525 9.7e-08 62.8 93 38.7
PGR031G3805 Punica granatum HOM05D006918 ORTHO05D008525 1.3e-07 62.4 78 46.2
Prupe.1G160300 Prunus persica HOM05D000162 ORTHO05D000090 1.7e-07 62.0 82 42.7
Cfa019931 Carpinus fangiana HOM05D006918 ORTHO05D008525 2.2e-07 61.6 59 50.8
MD04G1014300 Malus domestica HOM05D000162 ORTHO05D000090 4.8e-07 60.5 61 42.6
MD04G1014400 Malus domestica HOM05D037646 ORTHO05D036303 6.3e-07 60.1 61 42.6


User provided reference genes

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