Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 0.0e+00 1336.2 766 100.0
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.7e-258 895.6 815 71.9
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 6.9e-254 880.9 806 71.7
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.6e-250 869.8 830 68.8
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 2.5e-248 862.4 808 70.2
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 2.1e-234 816.2 791 68.8
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 9.0e-230 800.8 843 63.3
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.0e-225 787.3 853 53.1
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.3e-225 786.2 811 66.6
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.4e-222 776.2 692 62.0
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.1e-222 775.4 840 53.6
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 6.5e-220 768.1 802 65.7
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.4e-219 766.9 807 64.3
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.2e-219 765.4 831 62.3
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 5.5e-219 765.0 813 64.5
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.1e-216 757.3 802 65.3
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.5e-216 756.9 802 65.3
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 9.7e-216 754.2 808 63.2
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 3.7e-215 752.3 896 59.0
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 5.9e-213 745.0 811 64.0
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.7e-212 743.4 810 63.3
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 6.5e-212 741.5 805 63.6
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.2e-211 739.2 802 63.6
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 5.7e-208 728.4 841 52.4
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.7e-207 726.9 827 60.3
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 6.3e-207 724.9 810 62.1
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 8.2e-207 724.5 824 62.3
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 7.7e-205 718.0 793 63.2
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.7e-204 716.8 808 62.4
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.7e-204 716.8 811 63.4
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 6.5e-204 714.9 691 59.5
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.1e-203 714.1 805 62.5
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.1e-203 714.1 805 62.5
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 1.5e-203 713.8 795 62.6
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 1.5e-203 713.8 801 61.4
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.9e-203 713.4 808 61.6
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.5e-203 713.0 807 62.0
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 7.2e-203 711.4 885 58.6
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 4.7e-202 708.8 817 60.8
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 6.1e-202 708.4 806 62.8
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.4e-201 707.2 813 62.2
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.2e-200 704.1 799 61.2
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 4.4e-200 702.2 802 61.2
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.7e-199 700.3 796 63.3
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 8.2e-199 698.0 818 61.1
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 4.1e-198 695.7 815 61.8
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 1.2e-197 694.1 802 61.8
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.6e-197 693.7 801 61.5
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 3.5e-197 692.6 818 60.5
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 3.5e-197 692.6 795 61.9
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.7e-196 690.3 795 61.9
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 4.2e-195 685.6 806 61.7
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 4.2e-195 685.6 792 61.9
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 4.7e-194 682.2 795 61.5
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.8e-193 678.3 810 59.8
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.2e-192 677.6 811 60.2
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 2.6e-192 676.4 816 58.8
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 2.6e-192 676.4 811 59.7
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 5.7e-192 675.2 810 59.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.5e-192 674.9 810 59.8
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.3e-191 674.1 810 59.6
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.7e-191 673.7 800 60.4
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.7e-191 673.7 816 58.8
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.3e-191 671.8 799 61.3
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.3e-191 671.8 799 61.5
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.4e-190 670.6 800 61.5
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-190 669.1 800 61.4
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.0e-189 666.8 800 60.0
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 2.7e-189 666.4 804 60.2
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.7e-189 664.8 835 58.1
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.8e-188 662.5 805 59.0
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 4.2e-187 659.1 802 60.6
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.2e-186 657.5 733 63.4
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 2.1e-186 656.8 808 60.1
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 6.1e-186 655.2 808 59.5
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.8e-185 653.7 802 59.4
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 5.2e-185 652.1 806 59.6
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 6.8e-185 651.7 806 59.8
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 7.5e-184 648.3 802 59.7
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 9.8e-184 647.9 802 59.2
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 9.8e-184 647.9 796 58.5
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 4.1e-182 642.5 828 57.2
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 9.2e-182 641.3 805 58.8
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 2.7e-181 639.8 810 58.5
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.3e-180 637.5 807 57.2
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.3e-180 637.5 802 59.4
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 5.0e-180 635.6 837 56.8
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 6.6e-180 635.2 804 59.2
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 3.6e-178 629.4 806 58.6
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 3.6e-178 629.4 829 50.7
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.8e-177 627.1 806 58.4
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 5.2e-177 625.5 787 58.4
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 6.8e-177 625.2 802 58.2
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.2e-176 624.4 688 54.2
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 2.0e-176 623.6 811 58.1
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.6e-176 623.2 813 58.1
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 9.8e-176 621.3 821 58.0
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.9e-175 619.8 594 69.0
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 4.9e-175 619.0 822 57.5
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.3e-172 610.1 830 46.6
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 4.9e-167 592.4 899 52.7
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-166 590.9 808 57.2
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 2.4e-166 590.1 822 54.5
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 9.5e-163 578.2 795 55.7
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 9.5e-155 551.6 793 52.2
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 3.1e-153 546.6 843 52.2
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.7e-140 504.2 1254 39.4
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.3e-138 498.0 499 54.5
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 3.6e-138 496.5 774 51.6
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 2.0e-136 490.7 618 50.6
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 2.8e-130 470.3 830 46.7
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 3.7e-130 469.9 834 48.0
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 4.8e-122 443.0 803 49.6
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 9.3e-118 428.7 535 48.2
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 3.1e-113 413.7 819 46.8
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 5.0e-111 406.4 800 47.5
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 1.1e-105 388.7 798 46.7
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 6.3e-98 362.8 413 69.0
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.5e-96 358.2 432 47.9
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.5e-96 357.1 302 88.7
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 5.9e-96 356.3 415 69.6
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 4.2e-94 350.1 441 66.9
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 3.2e-86 323.9 694 36.2
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 5.2e-76 290.0 382 46.6
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-68 264.6 319 48.9
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 5.9e-64 250.0 371 43.4
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 1.5e-59 235.3 550 46.7
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 4.4e-59 233.8 544 34.4
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 9.2e-57 226.1 760 30.0
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 7.8e-56 223.0 334 45.2
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.3e-50 203.0 214 51.9
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.6e-45 188.7 200 57.0
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 5.2e-44 183.7 538 30.7
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.4e-41 175.6 716 27.7
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.6e-39 166.4 98 82.7
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 3.6e-37 161.0 201 46.8
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 5.8e-35 153.7 168 53.0
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-34 151.8 92 78.3
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-33 147.5 150 54.7
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 5.4e-33 147.1 148 54.7
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-32 145.6 281 35.9
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.6e-32 144.1 279 36.2
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.1e-30 139.4 279 35.1
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.5e-30 138.3 84 81.0
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-30 137.9 82 78.0
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.2e-27 129.4 144 51.4
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 5.8e-27 127.1 120 60.8
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-26 125.2 70 80.0
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 6.0e-24 117.1 93 65.6
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.6e-23 113.6 69 78.3
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 8.7e-23 113.2 93 63.4
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 4.3e-22 110.9 105 56.2
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.3e-22 110.2 61 83.6
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 9.6e-22 109.8 121 57.9
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-21 109.0 61 82.0
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.2e-21 107.1 101 55.4
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.2e-19 102.8 155 91.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-18 99.4 60 78.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 1.7e-18 99.0 154 90.9
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 6.4e-18 97.1 113 49.6
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-17 95.9 191 36.6
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 2.6e-11 75.1 186 31.7
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 3.4e-11 74.7 77 54.5
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.4e-10 70.1 60 63.3
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 1.8e-07 62.4 43 67.4
Lsat_1_v5_gn_3_135720 Lactuca sativa HOM05D004098 ORTHO05D005215 5.7e-06 57.4 38 76.3


User provided reference genes

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