Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G25014 Striga asiatica HOM05D005181 ORTHO05D006086 1.2e-311 1072.4 570 100.0
SGA_v2.0_scaffold168G38494 Striga asiatica HOM05D005181 ORTHO05D006086 1.7e-172 610.1 794 52.1
SalBow1G8605 Salvia bowleyana HOM05D005181 ORTHO05D006086 3.0e-89 333.6 805 35.3
Migut.D01451 Erythranthe guttata HOM05D005181 ORTHO05D006086 2.5e-83 313.9 765 35.0
unitig_736.g22463 Utricularia gibba HOM05D005181 ORTHO05D006086 1.0e-68 265.4 622 34.4
Lj5A154G68 Lonicera japonica HOM05D005181 ORTHO05D006086 1.0e-60 238.8 694 31.1
Dinv24641 Davidia involucrata HOM05D005181 ORTHO05D006086 1.3e-60 238.4 530 35.5
Actinidia37888 Actinidia chinensis HOM05D005181 ORTHO05D006086 2.4e-54 217.6 641 30.9
Rhsim13G0100900 Rhododendron simsii HOM05D005181 ORTHO05D006086 5.4e-54 216.5 625 30.4
TAR622G0602 Trochodendron aralioides HOM05D005181 ORTHO05D006086 6.0e-53 213.0 689 30.3
Nitab4.5_0012734g0010 Nicotiana tabacum HOM05D005181 ORTHO05D006086 1.0e-52 212.2 422 37.7
Nitab4.5_0001158g0050 Nicotiana tabacum HOM05D005181 ORTHO05D006086 1.3e-52 211.8 422 37.7
Cc04_g06620 Coffea canephora HOM05D002288 ORTHO05D002894 1.5e-51 208.4 683 29.6
Solyc03g119050.4 Solanum lycopersicum HOM05D005181 ORTHO05D006086 2.5e-51 207.6 405 37.5
Peaxi162Scf00683g00242 Petunia axillaris HOM05D005181 ORTHO05D006086 4.3e-51 206.8 394 38.6
GSVIVG01008395001 Vitis vinifera HOM05D002288 ORTHO05D006086 2.8e-50 204.1 500 33.6
TWI60G1411 Tripterygium wilfordii HOM05D005181 ORTHO05D006086 3.1e-49 200.7 617 31.3
ECA233G2213 Erigeron canadensis HOM05D005181 ORTHO05D006086 4.0e-49 200.3 431 37.1
Sopen03g037940 Solanum pennellii HOM05D005181 ORTHO05D006086 6.9e-49 199.5 396 37.1
CiPaw.15G139300 Carya illinoinensis HOM05D005181 ORTHO05D006086 5.8e-48 196.4 612 29.6
vmacro09847 Vaccinium macrocarpon HOM05D005181 ORTHO05D006086 9.9e-48 195.7 502 32.3
Oeu040446.1 Olea europaea HOM05D005181 ORTHO05D006086 1.3e-47 195.3 544 31.8
TWI81G0236 Tripterygium wilfordii HOM05D005181 ORTHO05D006086 3.8e-47 193.7 589 31.1
CAN.G1129.29 Capsicum annuum HOM05D005181 ORTHO05D006086 1.4e-46 191.8 311 40.8
HanXRQChr05g0140931 Helianthus annuus HOM05D005181 ORTHO05D006086 2.4e-46 191.0 395 38.2
Eucgr.B00857 Eucalyptus grandis HOM05D005181 ORTHO05D006086 7.1e-46 189.5 453 33.8
PSO675G7584 Papaver somniferum HOM05D005181 ORTHO05D006086 4.6e-45 186.8 652 29.3
FAN08G2561 Fragaria x ananassa HOM05D005181 ORTHO05D006086 1.0e-44 185.7 417 34.3
FAN13G0793 Fragaria x ananassa HOM05D005181 ORTHO05D006086 1.0e-44 185.7 640 28.8
Prupe.5G230100 Prunus persica HOM05D005181 ORTHO05D006086 1.0e-44 185.7 413 33.7
RcHm_v2.0_Chr7g0178781 Rosa chinensis HOM05D005181 ORTHO05D006086 1.0e-44 185.7 418 34.0
FAN18G0354 Fragaria x ananassa HOM05D005181 ORTHO05D006086 2.3e-44 184.5 417 34.3
FAN04G2630 Fragaria x ananassa HOM05D005181 ORTHO05D006086 3.9e-44 183.7 421 34.2
Atru.chr9.956 Acer truncatum HOM05D005181 ORTHO05D006086 5.1e-44 183.3 665 28.1
Nn4g24098 Nelumbo nucifera HOM05D005181 ORTHO05D006086 7.3e-43 179.5 509 30.8
FvH4_5g17070 Fragaria vesca HOM05D005181 ORTHO05D006086 9.6e-43 179.1 651 29.0
PSO541G5122 Papaver somniferum HOM05D005181 ORTHO05D006086 1.3e-42 178.7 552 30.1
PGR083G0229 Punica granatum HOM05D005181 ORTHO05D006086 2.1e-42 177.9 508 30.9
Lsat_1_v5_gn_8_145621 Lactuca sativa HOM05D005181 ORTHO05D006086 3.6e-42 177.2 412 33.7
QL10p027571 Quercus lobata HOM05D005181 ORTHO05D006086 4.8e-42 176.8 528 30.9
Duzib205G1340 Durio zibethinus HOM05D005181 ORTHO05D006086 1.5e-40 171.8 479 30.7
Gorai.008G288900 Gossypium raimondii HOM05D005181 ORTHO05D006086 1.5e-40 171.8 458 31.9
MD14G1233900 Malus domestica HOM05D005181 ORTHO05D006086 1.5e-40 171.8 675 27.9
Gohir.D12G268700 Gossypium hirsutum HOM05D005181 ORTHO05D006086 4.5e-40 170.2 455 31.9
Ciclev10007362m.g Citrus clementina HOM05D005181 ORTHO05D006086 7.6e-40 169.5 564 29.3
Potri.015G041500 Populus trichocarpa HOM05D005181 ORTHO05D006086 1.3e-39 168.7 514 31.3
HanXRQChr07g0206911 Helianthus annuus HOM05D005181 ORTHO05D006086 2.2e-39 167.9 391 34.5
Manes.14G168800 Manihot esculenta HOM05D005181 ORTHO05D006086 2.9e-39 167.5 549 29.0
MBI10_g07295_MAGBIO Magnolia biondii HOM05D005181 ORTHO05D006086 4.2e-38 163.7 552 29.3
vmacro17791 Vaccinium macrocarpon HOM05D005181 ORTHO05D006086 5.4e-38 163.3 323 37.2
CANSAT80G0160 Cannabis sativa HOM05D005181 ORTHO05D006086 1.6e-37 161.8 311 36.3
CANSAT80G2311 Cannabis sativa HOM05D005181 ORTHO05D006086 1.6e-37 161.8 311 36.3
Aqoxy3G00439 Aquilegia oxysepala HOM05D005181 ORTHO05D006086 2.1e-37 161.4 492 29.7
Sabra15G0055600 Salix brachista HOM05D005181 ORTHO05D006086 3.5e-37 160.6 584 29.1
Cpa.g.sc3.430 Carica papaya HOM05D005181 ORTHO05D006086 3.0e-36 157.5 343 34.7
Sc06g0002030 Simmondsia chinensis HOM05D005181 ORTHO05D006086 1.1e-35 155.6 501 28.7
Cfa019696 Carpinus fangiana HOM05D005181 ORTHO05D006086 1.9e-35 154.8 624 27.1
Lalb_Chr22g0353341 Lupinus albus HOM05D005181 ORTHO05D006086 1.9e-35 154.8 433 31.9
Aa31LG8G4950 Aethionema arabicum HOM05D005181 ORTHO05D006086 2.5e-35 154.5 441 31.7
AUR62036514 Chenopodium quinoa HOM05D005181 ORTHO05D006086 5.6e-35 153.3 588 27.6
TPR.G21383 Trifolium pratense HOM05D005181 ORTHO05D006086 1.6e-34 151.8 342 34.2
Phvul.003G004600 Phaseolus vulgaris HOM05D005181 ORTHO05D006086 4.8e-34 150.2 375 35.2
Thecc.03G047800 Theobroma cacao HOM05D005181 ORTHO05D006086 6.2e-34 149.8 513 29.2
vmacro07281 Vaccinium macrocarpon HOM05D005181 ORTHO05D006086 6.2e-34 149.8 822 24.8
Sed0017978 Sechium edule HOM05D005181 ORTHO05D006086 8.1e-34 149.4 308 37.3
CsaV3_3G006700 Cucumis sativus L. HOM05D005181 ORTHO05D006086 1.4e-33 148.7 429 32.6
Lj2g0017806 Lotus japonicus HOM05D005181 ORTHO05D006086 2.4e-33 147.9 209 41.6
Glyma.09G178000 Glycine max HOM05D005181 ORTHO05D006086 6.9e-33 146.4 344 33.1
MELO3C016456.2 Cucumis melo HOM05D005181 ORTHO05D006086 1.5e-32 145.2 310 37.7
Gohir.A12G268300 Gossypium hirsutum HOM05D005181 ORTHO05D006086 2.6e-32 144.4 443 30.5
Aqoxy3G03966 Aquilegia oxysepala HOM05D005181 ORTHO05D006086 3.4e-32 144.1 615 26.3
A05p31690 Brassica napus HOM05D005181 ORTHO05D006086 4.5e-32 143.7 421 30.4
Psat1g033720 Pisum sativum HOM05D005181 ORTHO05D006086 4.5e-32 143.7 208 41.3
AL7G34390 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 1.3e-31 142.1 424 29.5
Medtr6g080360 Medicago truncatula HOM05D005181 ORTHO05D006086 1.3e-31 142.1 339 32.2
AUR62037061 Chenopodium quinoa HOM05D005181 ORTHO05D006086 1.7e-31 141.7 458 28.2
VMungo0251G3066 Vigna mungo HOM05D001910 ORTHO05D006086 1.7e-31 141.7 554 30.1
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.2e-31 141.4 503 28.2
Glyma.07G100700 Glycine max HOM05D005181 ORTHO05D006086 2.9e-31 141.0 213 39.9
THA.LOC104821834 Tarenaya hassleriana HOM05D005181 ORTHO05D006086 3.8e-31 140.6 437 30.0
Ah.12g061970 Amaranthus hybridus HOM05D005181 ORTHO05D006086 4.9e-31 140.2 620 27.3
BraA05t22002Z Brassica rapa HOM05D005181 ORTHO05D006086 4.9e-31 140.2 421 30.2
Haze_18792 Corylus avellana HOM05D005181 ORTHO05D006086 8.4e-31 139.4 661 25.0
Thhalv10020020m.g Eutrema salsugineum HOM05D005181 ORTHO05D006086 1.1e-30 139.0 427 30.0
Phvul.004G151600 Phaseolus vulgaris HOM05D005181 ORTHO05D006086 5.5e-30 136.7 342 31.0
Sp3g16220 Schrenkiella parvula HOM05D005181 ORTHO05D006086 7.1e-30 136.3 305 34.1
C05p48090 Brassica napus HOM05D005181 ORTHO05D006086 1.6e-29 135.2 306 33.3
Carub.0003s1783 Capsella rubella HOM05D005181 ORTHO05D006086 2.1e-29 134.8 298 35.6
BolC5t33518H Brassica oleracea HOM05D005181 ORTHO05D006086 6.0e-29 133.3 439 29.6
BcaC09g51390 Brassica carinata HOM05D005181 ORTHO05D006086 1.0e-28 132.5 416 29.6
BcaNung01760 Brassica carinata HOM05D005181 ORTHO05D006086 1.3e-28 132.1 414 29.0
C01p13650 Brassica napus HOM05D005181 ORTHO05D006086 1.8e-28 131.7 416 29.6
arahy.Tifrunner.gnm1.ann1.QZK539 Arachis hypogaea HOM05D005181 ORTHO05D006086 5.1e-28 130.2 593 29.7
arahy.Tifrunner.gnm1.ann1.UX5VDV Arachis hypogaea HOM05D005181 ORTHO05D006086 5.1e-28 130.2 596 30.4
A01p11570 Brassica napus HOM05D005181 ORTHO05D006086 5.1e-28 130.2 418 29.2
ClCG05G014580 Citrullus lanatus HOM05D005181 ORTHO05D006086 5.1e-28 130.2 262 39.3
BolC1t01339H Brassica oleracea HOM05D005181 ORTHO05D006086 8.7e-28 129.4 416 29.6
BraA01t01105Z Brassica rapa HOM05D005181 ORTHO05D006086 1.5e-27 128.6 414 29.5
Carub.0007s2150 Capsella rubella HOM05D005181 ORTHO05D006086 9.6e-27 125.9 392 28.3
AL3G31260 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 1.3e-26 125.6 556 26.6
COL.COLO4_21587 Corchorus olitorius HOM05D005181 ORTHO05D006086 8.2e-26 122.9 330 31.5
AT3G18100 Arabidopsis thaliana HOM05D005181 ORTHO05D006086 5.3e-25 120.2 351 30.2
Zm00001eb299750 Zea mays HOM05D005181 ORTHO05D006086 3.4e-24 117.5 403 28.0
Sp7g18220 Schrenkiella parvula HOM05D005181 ORTHO05D006086 1.3e-23 115.5 396 28.3
SEGI_11728 Sequoiadendron giganteum HOM05D005181 ORTHO05D006086 2.2e-23 114.8 381 27.3
Hma1.2p1_0669F.1_g200310 Hydrangea macrophylla HOM05D005181 ORTHO05D006086 2.9e-23 114.4 392 27.8
DCAR_005622 Daucus carota HOM05D005181 ORTHO05D006086 8.4e-23 112.8 204 36.8
BolC5t33549H Brassica oleracea HOM05D005181 ORTHO05D006086 5.5e-22 110.2 326 30.7
AL7G46060 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 7.1e-22 109.8 307 31.9
ATR0326G048 Amborella trichopoda HOM05D005181 ORTHO05D006086 6.7e-20 103.2 192 34.4
HPP92_001896 Vanilla planifolia HOM05D005181 ORTHO05D006086 3.4e-16 90.9 306 26.8
CDE09G1365 Ceratophyllum demersum HOM05D005181 ORTHO05D006086 4.5e-16 90.5 399 23.6
Hma1.2p1_0669F.1_g200300 Hydrangea macrophylla HOM05D005181 ORTHO05D006086 1.4e-14 85.5 64 68.8
RcHm_v2.0_Chr7g0230201 Rosa chinensis HOM05D005181 ORTHO05D006086 1.4e-14 85.5 390 27.7
TPR.G22856 Trifolium pratense HOM05D005181 ORTHO05D006086 7.9e-13 79.7 100 44.0
CSS0001327 Camellia sinensis var. sinensis HOM05D000119 ORTHO05D006086 1.0e-12 79.3 137 37.2
Mapoly0061s0069 Marchantia polymorpha HOM05D005181 ORTHO05D006086 2.3e-12 78.2 206 26.7
Sabra15G0063200 Salix brachista HOM05D005181 ORTHO05D006086 3.7e-10 70.9 323 27.6
PGSC0003DMG400005657 Solanum tuberosum HOM05D005181 ORTHO05D006086 8.2e-10 69.7 129 35.7
CDE09G1040 Ceratophyllum demersum HOM05D005181 ORTHO05D034271 1.8e-09 68.6 181 30.9
VMungo0464G1729 Vigna mungo HOM05D005181 ORTHO05D006086 3.4e-08 64.3 188 29.3
BcaNung01761 Brassica carinata HOM05D005181 ORTHO05D006086 1.3e-07 62.4 240 30.4
AagrBONN_evm.TU.Sc2ySwM_344.1873 Anthoceros agrestis HOM05D000119 ORTHO05D006086 2.9e-07 61.2 130 34.6
Pp3c13_8880 Physcomitrium patens HOM05D005181 ORTHO05D006086 2.9e-07 61.2 294 23.5


User provided reference genes

Program Settings