Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24970 Striga asiatica HOM05D005735 ORTHO05D006547 3.4e-121 438.3 218 100.0
Migut.J00281 Erythranthe guttata HOM05D005735 ORTHO05D006547 3.0e-77 292.4 212 68.9
Hma1.2p1_0766F.1_g215130 Hydrangea macrophylla HOM05D005735 ORTHO05D006547 3.4e-73 278.9 197 69.5
Solyc09g011300.3 Solanum lycopersicum HOM05D005735 ORTHO05D006547 3.8e-72 275.4 159 79.9
Duzib093G1348 Durio zibethinus HOM05D005735 ORTHO05D006547 6.4e-72 274.6 200 70.5
RcHm_v2.0_Chr3g0465081 Rosa chinensis HOM05D005735 ORTHO05D006547 6.4e-72 274.6 200 67.5
Manes.09G096300 Manihot esculenta HOM05D005735 ORTHO05D006547 8.4e-72 274.2 156 80.8
FvH4_6g12970 Fragaria vesca HOM05D005735 ORTHO05D006547 1.1e-71 273.9 204 68.1
CAN.G229.30 Capsicum annuum HOM05D005735 ORTHO05D006547 1.4e-71 273.5 149 83.9
Gohir.D09G149000 Gossypium hirsutum HOM05D005735 ORTHO05D006547 1.9e-71 273.1 200 68.0
Gorai.006G170200 Gossypium raimondii HOM05D005735 ORTHO05D006547 1.9e-71 273.1 200 68.0
MD04G1136300 Malus domestica HOM05D005735 ORTHO05D006547 1.9e-71 273.1 202 67.8
Thecc.05G031800 Theobroma cacao HOM05D005735 ORTHO05D006547 1.9e-71 273.1 199 69.3
Actinidia29177 Actinidia chinensis HOM05D005735 ORTHO05D006547 2.4e-71 272.7 169 75.1
Gohir.A09G153300 Gossypium hirsutum HOM05D005735 ORTHO05D006547 2.4e-71 272.7 200 67.5
COL.COLO4_14723 Corchorus olitorius HOM05D005735 ORTHO05D006547 4.2e-71 271.9 159 80.5
Nitab4.5_0000362g0060 Nicotiana tabacum HOM05D005735 ORTHO05D006547 4.2e-71 271.9 155 81.3
MD12G1150800 Malus domestica HOM05D005735 ORTHO05D006547 5.4e-71 271.6 179 71.5
Nn2g13495 Nelumbo nucifera HOM05D005735 ORTHO05D006547 7.1e-71 271.2 216 66.7
Dinv35555 Davidia involucrata HOM05D005735 ORTHO05D006547 1.2e-70 270.4 212 66.5
Ciclev10012178m.g Citrus clementina HOM05D005735 ORTHO05D006547 2.7e-70 269.2 196 65.8
Prupe.6G262400 Prunus persica HOM05D005735 ORTHO05D006547 2.7e-70 269.2 182 71.4
Dinv37132 Davidia involucrata HOM05D005735 ORTHO05D006547 4.6e-70 268.5 155 80.0
ECA236G4371 Erigeron canadensis HOM05D005735 ORTHO05D006547 4.6e-70 268.5 158 78.5
Sopen09g006020 Solanum pennellii HOM05D005735 ORTHO05D006547 4.6e-70 268.5 148 82.4
TAR636G0229 Trochodendron aralioides HOM05D005735 ORTHO05D006547 4.6e-70 268.5 219 64.8
Cfa017317 Carpinus fangiana HOM05D005735 ORTHO05D006547 7.8e-70 267.7 205 66.8
Lj3g0007667 Lotus japonicus HOM05D005735 ORTHO05D006547 7.8e-70 267.7 178 70.8
Phvul.010G015300 Phaseolus vulgaris HOM05D005735 ORTHO05D006547 7.8e-70 267.7 172 72.1
Haze_20854 Corylus avellana HOM05D005735 ORTHO05D006547 1.3e-69 266.9 204 67.2
Actinidia13829 Actinidia chinensis HOM05D005735 ORTHO05D006547 1.7e-69 266.5 169 74.0
PGR031G0186 Punica granatum HOM05D005735 ORTHO05D006547 2.3e-69 266.2 155 80.6
GSVIVG01034092001 Vitis vinifera HOM05D005735 ORTHO05D006547 3.9e-69 265.4 156 77.6
Cc06_g02200 Coffea canephora HOM05D005735 ORTHO05D006547 5.1e-69 265.0 215 63.3
Lalb_Chr24g0401021 Lupinus albus HOM05D005735 ORTHO05D006547 5.1e-69 265.0 215 64.7
Potri.006G091000 Populus trichocarpa HOM05D005735 ORTHO05D006547 5.1e-69 265.0 202 69.3
Glyma.03G069600 Glycine max HOM05D005735 ORTHO05D006547 6.6e-69 264.6 163 76.7
HanXRQChr06g0177411 Helianthus annuus HOM05D005735 ORTHO05D006547 6.6e-69 264.6 152 79.6
Hund16974 Selenicereus undatus HOM05D005735 ORTHO05D006547 6.6e-69 264.6 158 78.5
Atru.chr8.2067 Acer truncatum HOM05D005735 ORTHO05D006547 8.7e-69 264.2 204 66.7
CsaV3_4G025430 Cucumis sativus L. HOM05D005735 ORTHO05D006547 8.7e-69 264.2 202 67.8
vmacro08634 Vaccinium macrocarpon HOM05D005735 ORTHO05D006547 8.7e-69 264.2 216 63.9
CiPaw.09G199400 Carya illinoinensis HOM05D005735 ORTHO05D006547 1.1e-68 263.8 148 82.4
Haze_20857 Corylus avellana HOM05D005735 ORTHO05D006547 1.5e-68 263.5 204 66.7
arahy.Tifrunner.gnm1.ann1.879M1U Arachis hypogaea HOM05D005735 ORTHO05D006547 1.9e-68 263.1 207 63.3
QL07p028744 Quercus lobata HOM05D005735 ORTHO05D006547 1.9e-68 263.1 151 80.8
Rhsim04G0162200 Rhododendron simsii HOM05D005735 ORTHO05D006547 2.5e-68 262.7 179 72.1
TPR.G17885 Trifolium pratense HOM05D005735 ORTHO05D006547 2.5e-68 262.7 208 64.4
MELO3C003165.2 Cucumis melo HOM05D005735 ORTHO05D006547 3.3e-68 262.3 148 81.8
FAN05G2836 Fragaria x ananassa HOM05D005735 ORTHO05D006547 3.3e-68 262.3 210 64.8
Sed0015161 Sechium edule HOM05D005735 ORTHO05D006547 4.3e-68 261.9 154 78.6
Sc01g0004650 Simmondsia chinensis HOM05D005735 ORTHO05D006547 4.3e-68 261.9 163 74.2
Glyma.01G099700 Glycine max HOM05D005735 ORTHO05D006547 5.6e-68 261.5 150 78.7
CSS0004316 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 7.3e-68 261.2 162 76.5
CANSAT35G1842 Cannabis sativa HOM05D005735 ORTHO05D006547 7.3e-68 261.2 193 65.8
arahy.Tifrunner.gnm1.ann1.ECZP7J Arachis hypogaea HOM05D005735 ORTHO05D006547 9.6e-68 260.8 172 70.3
CiPaw.10G148500 Carya illinoinensis HOM05D005735 ORTHO05D006547 9.6e-68 260.8 156 76.3
TWI77G0204 Tripterygium wilfordii HOM05D005735 ORTHO05D006547 1.3e-67 260.4 202 65.3
THA.LOC104805616 Tarenaya hassleriana HOM05D005735 ORTHO05D006547 2.1e-67 259.6 170 72.9
Medtr4g020090 Medicago truncatula HOM05D005735 ORTHO05D006547 4.8e-67 258.5 176 70.5
Cpa.g.sc56.31 Carica papaya HOM05D005735 ORTHO05D006547 6.2e-67 258.1 148 81.8
MBI14_g09010_MAGBIO Magnolia biondii HOM05D005735 ORTHO05D006547 8.1e-67 257.7 152 78.3
Eucgr.B02718 Eucalyptus grandis HOM05D005735 ORTHO05D006547 1.1e-66 257.3 183 68.9
BcaC08g44651 Brassica carinata HOM05D005735 ORTHO05D006547 1.4e-66 256.9 151 78.8
C06p21670 Brassica napus HOM05D005735 ORTHO05D006547 1.4e-66 256.9 151 78.8
BolC6t37356H Brassica oleracea HOM05D005735 ORTHO05D006547 1.4e-66 256.9 151 78.8
BraA07t29866Z Brassica rapa HOM05D005735 ORTHO05D006547 1.4e-66 256.9 151 78.8
Lsat_1_v5_gn_8_84641 Lactuca sativa HOM05D005735 ORTHO05D006547 1.8e-66 256.5 156 75.0
EL10Ac1g00952 Beta vulgaris HOM05D005735 ORTHO05D006547 3.1e-66 255.8 201 61.2
BcaB01g00229 Brassica carinata HOM05D005735 ORTHO05D006547 3.1e-66 255.8 180 68.9
Psat7g240200 Pisum sativum HOM05D005735 ORTHO05D006547 3.1e-66 255.8 148 78.4
Aa31sc27G110 Aethionema arabicum HOM05D005735 ORTHO05D006547 4.0e-66 255.4 195 64.1
Sp5g08500 Schrenkiella parvula HOM05D005735 ORTHO05D006547 4.0e-66 255.4 180 70.6
AL5G34880 Arabidopsis lyrata HOM05D005735 ORTHO05D006547 5.3e-66 255.0 203 64.5
BraA09t40153Z Brassica rapa HOM05D005735 ORTHO05D006547 5.3e-66 255.0 157 76.4
Thhalv10010595m.g Eutrema salsugineum HOM05D005735 ORTHO05D006547 5.3e-66 255.0 200 65.5
Lalb_Chr22g0358651 Lupinus albus HOM05D005735 ORTHO05D006547 5.3e-66 255.0 198 64.6
Aqoxy2G02353 Aquilegia oxysepala HOM05D005735 ORTHO05D006547 6.9e-66 254.6 155 74.8
BcaB02g07762 Brassica carinata HOM05D005735 ORTHO05D006547 6.9e-66 254.6 223 61.4
AT3G53900 Arabidopsis thaliana HOM05D005735 ORTHO05D006547 9.0e-66 254.2 203 66.0
Carub.0005s2048 Capsella rubella HOM05D005735 ORTHO05D006547 9.0e-66 254.2 151 78.1
A07p21840 Brassica napus HOM05D005735 ORTHO05D006547 1.2e-65 253.8 151 78.1
A09p46850 Brassica napus HOM05D005735 ORTHO05D006547 1.2e-65 253.8 156 76.9
CARHR163810 Cardamine hirsuta HOM05D005735 ORTHO05D006547 1.2e-65 253.8 201 65.2
Lj2A88G66 Lonicera japonica HOM05D005735 ORTHO05D006547 1.2e-65 253.8 165 76.4
BcaC07g39745 Brassica carinata HOM05D000012 ORTHO05D002345 2.0e-65 253.1 151 78.1
BolC8t50518H Brassica oleracea HOM05D005735 ORTHO05D006547 2.0e-65 253.1 151 78.1
AUR62004273 Chenopodium quinoa HOM05D005735 ORTHO05D006547 2.0e-65 253.1 157 72.0
Ca_20080_v3 Cicer arietinum L. HOM05D005735 ORTHO05D006547 2.6e-65 252.7 144 79.2
PSO339G4903 Papaver somniferum HOM05D005735 ORTHO05D006547 2.6e-65 252.7 147 79.6
Oeu001404.1 Olea europaea HOM05D005735 ORTHO05D006547 4.5e-65 251.9 148 81.1
PSO513G0055 Papaver somniferum HOM05D005735 ORTHO05D006547 9.9e-65 250.8 147 78.9
VMungo0331G1562 Vigna mungo HOM05D005735 ORTHO05D006547 1.3e-64 250.4 150 76.0
C08p29170 Brassica napus HOM05D005735 ORTHO05D006547 1.7e-64 250.0 150 78.0
HPP92_027961 Vanilla planifolia HOM05D005735 ORTHO05D006547 1.7e-64 250.0 203 65.0
FAN02G2999 Fragaria x ananassa HOM05D005735 ORTHO05D006547 2.9e-64 249.2 142 81.0
DCAR_028771 Daucus carota HOM05D005735 ORTHO05D006547 3.8e-64 248.8 155 74.8
Duzib128G0016 Durio zibethinus HOM05D005735 ORTHO05D006547 8.4e-64 247.7 138 84.8
Peaxi162Scf00318g00510 Petunia axillaris HOM05D005735 ORTHO05D006547 8.4e-64 247.7 137 82.5
ATR0559G328 Amborella trichopoda HOM05D005735 ORTHO05D006547 1.1e-63 247.3 155 73.5
HanXRQChr04g0124581 Helianthus annuus HOM05D005735 ORTHO05D006547 1.4e-63 246.9 152 75.7
AUR62033384 Chenopodium quinoa HOM05D005735 ORTHO05D006547 5.4e-63 245.0 168 67.9
CDE04G2966 Ceratophyllum demersum HOM05D005735 ORTHO05D006547 6.0e-62 241.5 165 70.3
Os05g0455700 Oryza sativa ssp. japonica HOM05D005735 ORTHO05D006547 6.0e-62 241.5 202 62.4
Mapoly0035s0109 Marchantia polymorpha HOM05D005735 ORTHO05D006547 1.0e-61 240.7 191 60.2
Zm00001eb289550 Zea mays HOM05D005735 ORTHO05D006547 1.0e-61 240.7 151 74.8
PGSC0003DMG400008888 Solanum tuberosum HOM05D005735 ORTHO05D006547 3.9e-61 238.8 127 85.0
Migut.J00280 Erythranthe guttata HOM05D005735 ORTHO05D006547 1.1e-58 230.7 144 77.8
Sabra06G0068800 Salix brachista HOM05D005735 ORTHO05D006547 1.3e-56 223.8 213 60.6
AagrBONN_evm.TU.Sc2ySwM_228.3184 Anthoceros agrestis HOM05D005735 ORTHO05D006547 4.9e-56 221.9 183 61.2
Pp3c9_24300 Physcomitrium patens HOM05D005735 ORTHO05D006547 6.4e-56 221.5 154 66.9
SMO147G0009 Selaginella moellendorffii HOM05D005735 ORTHO05D006547 1.1e-55 220.7 137 71.5
CSS0042696 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 5.5e-55 218.4 118 86.4
Nn2g13496 Nelumbo nucifera HOM05D005735 ORTHO05D006547 6.0e-54 214.9 179 65.4
ClCG04G007800 Citrullus lanatus HOM05D005735 ORTHO05D006547 1.3e-53 213.8 200 57.5
Nitab4.5_0006535g0030 Nicotiana tabacum HOM05D005735 ORTHO05D006547 1.8e-53 213.4 200 59.0
Hund27335 Selenicereus undatus HOM05D005735 ORTHO05D006547 2.1e-51 206.5 340 39.1
Ah.05g175740 Amaranthus hybridus HOM05D005735 ORTHO05D006547 4.8e-51 205.3 157 62.4
CBR_g17719 Chara braunii HOM05D005735 ORTHO05D006547 9.0e-50 201.1 144 61.1
MCO15G321 Micromonas commoda HOM05D005735 ORTHO05D006547 9.3e-47 191.0 139 61.2
unitig_578.g15880 Utricularia gibba HOM05D005735 ORTHO05D006547 1.6e-46 190.3 108 83.3
Zm00001eb412190 Zea mays HOM05D005735 ORTHO05D006547 4.6e-46 188.7 144 61.1
CANSAT35G0868 Cannabis sativa HOM05D005735 ORTHO05D006547 3.0e-45 186.0 108 77.8
FAN14G2901 Fragaria x ananassa HOM05D005735 ORTHO05D006547 6.7e-45 184.9 109 78.9
CSS0015426 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 1.6e-43 180.3 136 64.0
PRCOL_00001881 Prasinoderma coloniale HOM05D005735 ORTHO05D006547 2.5e-39 166.4 130 56.9
DCAR_012131 Daucus carota HOM05D005735 ORTHO05D006547 9.3e-39 164.5 215 44.7
Cre11.g467778 Chlamydomonas reinhardtii HOM05D005735 ORTHO05D006547 1.0e-37 161.0 191 45.5
MSTRG.5635 Avicennia marina HOM05D005735 ORTHO05D006547 1.4e-29 134.0 108 65.7
Solyc03g063860.1 Solanum lycopersicum HOM05D005735 ORTHO05D006547 1.4e-26 124.0 119 58.0
Lsat_1_v5_gn_9_19861 Lactuca sativa HOM05D005735 ORTHO05D006547 4.5e-25 119.0 71 77.5
FAN09G1978 Fragaria x ananassa HOM05D005735 ORTHO05D006547 1.5e-20 104.0 65 76.9
BraA05t19030Z Brassica rapa HOM05D011067 ORTHO05D028343 3.8e-16 89.4 126 39.7
BraA09t38956Z Brassica rapa HOM05D011067 ORTHO05D028343 3.8e-16 89.4 151 39.7
Cpa.g.sc56.35 Carica papaya HOM05D005735 ORTHO05D006547 1.3e-11 74.3 68 52.9
SalBow1G2503 Salvia bowleyana HOM05D000666 ORTHO05D006547 3.1e-10 69.7 40 77.5
BcaC05g28138 Brassica carinata HOM05D011067 ORTHO05D014965 5.9e-09 65.5 49 57.1
A03p21220 Brassica napus HOM05D011067 ORTHO05D014965 7.7e-09 65.1 54 53.7
C01p21930 Brassica napus HOM05D011067 ORTHO05D014965 7.7e-09 65.1 54 53.7
BcaC03g14360 Brassica carinata HOM05D011067 ORTHO05D014965 1.3e-08 64.3 54 53.7
Thecc.06G103800 Theobroma cacao HOM05D005735 ORTHO05D006547 2.9e-08 63.2 45 66.7
CAN.G208.27 Capsicum annuum HOM05D005735 ORTHO05D006547 5.0e-08 62.4 36 77.8
C03p64990 Brassica napus HOM05D011067 ORTHO05D014965 6.5e-08 62.0 54 50.0
BcaC04g22813 Brassica carinata HOM05D011067 ORTHO05D014965 2.5e-07 60.1 54 51.9
C09p15120 Brassica napus HOM05D011067 ORTHO05D014965 2.5e-07 60.1 54 51.9
BolC3t18757H Brassica oleracea HOM05D011067 ORTHO05D028343 3.2e-07 59.7 84 42.9
AL5G34890 Arabidopsis lyrata HOM05D001257 ORTHO05D009517 9.4e-07 58.2 99 39.4
A04p05840 Brassica napus HOM05D001257 ORTHO05D009517 1.2e-06 57.8 51 49.0
BolC9t54418H Brassica oleracea HOM05D011067 ORTHO05D028343 1.2e-06 57.8 84 44.0
BraA04t16281Z Brassica rapa HOM05D001257 ORTHO05D009517 1.2e-06 57.8 51 49.0
Thhalv10010251m.g Eutrema salsugineum HOM05D001257 ORTHO05D009517 1.6e-06 57.4 41 61.0
AT3G53920 Arabidopsis thaliana HOM05D001257 ORTHO05D009517 2.1e-06 57.0 96 37.5
BcaB02g08502 Brassica carinata HOM05D001257 ORTHO05D009517 2.1e-06 57.0 32 75.0


User provided reference genes

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