Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 0.0e+00 1359.0 684 100.0
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 1.3e-243 846.7 730 62.7
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 1.3e-243 846.7 735 61.6
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 4.9e-195 685.3 742 52.7
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 5.5e-186 655.2 740 50.1
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 3.5e-185 652.5 749 49.3
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 4.6e-185 652.1 715 50.1
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 4.3e-183 645.6 745 49.1
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 1.1e-181 641.0 749 48.6
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 1.1e-181 641.0 724 50.7
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 4.1e-181 639.0 754 48.8
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 6.9e-181 638.3 753 49.3
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 2.5e-178 629.8 760 47.4
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 7.9e-177 624.8 740 47.6
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 8.8e-176 621.3 720 48.6
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.5e-175 620.5 718 48.6
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.8e-174 616.3 742 47.3
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 3.7e-174 615.9 761 47.2
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 1.8e-173 613.6 742 47.4
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 3.1e-173 612.8 739 46.8
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 5.3e-173 612.1 729 49.0
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 1.2e-172 610.9 739 46.5
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.7e-171 607.1 728 48.6
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 2.5e-170 603.2 738 48.0
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 9.4e-170 601.3 753 46.1
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 1.2e-169 600.9 743 45.8
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 1.4e-168 597.4 753 45.8
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.1e-167 594.3 751 46.1
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 3.3e-167 592.8 708 47.6
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 4.4e-167 592.4 669 48.7
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 5.7e-167 592.0 731 46.5
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 7.4e-167 591.7 741 47.8
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 4.8e-166 589.0 791 44.9
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 4.8e-166 589.0 757 45.7
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 7.0e-165 585.1 743 46.2
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 2.0e-164 583.6 746 47.5
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 7.7e-164 581.6 755 45.3
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 1.7e-163 580.5 733 47.5
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 3.8e-163 579.3 737 45.5
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.5e-162 577.4 724 46.3
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 7.2e-162 575.1 748 43.9
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 9.4e-162 574.7 750 44.0
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 2.1e-161 573.5 745 44.0
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 2.7e-161 573.2 740 45.1
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 4.7e-161 572.4 744 44.5
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 8.0e-161 571.6 768 45.2
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 1.8e-160 570.5 733 43.9
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 6.7e-160 568.5 751 44.2
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 7.5e-159 565.1 681 48.0
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 9.7e-159 564.7 750 44.1
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 9.7e-159 564.7 751 43.9
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 4.8e-158 562.4 520 58.3
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 8.2e-158 561.6 710 45.5
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 1.2e-156 557.8 732 42.8
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 1.2e-156 557.8 717 44.8
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 1.7e-155 553.9 741 42.8
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.2e-155 553.5 707 46.5
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 3.8e-155 552.7 783 43.3
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.1e-154 551.2 701 43.1
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 1.2e-153 547.7 698 45.7
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 6.1e-153 545.4 817 41.6
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 1.4e-152 544.3 740 42.4
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 1.4e-152 544.3 674 44.7
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.8e-152 543.9 795 42.0
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 4.0e-152 542.7 785 41.7
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.5e-151 540.8 741 42.6
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 4.8e-150 535.8 738 42.3
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.5e-146 523.5 742 42.2
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 2.1e-145 520.4 794 39.9
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.4e-144 517.7 698 45.8
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 5.7e-143 512.3 711 41.8
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 1.3e-142 511.1 700 43.0
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 1.7e-142 510.8 711 41.6
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 9.2e-141 505.0 708 41.9
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 5.9e-140 502.3 744 41.1
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 8.0e-137 491.9 734 40.5
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 5.2e-136 489.2 741 39.4
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 8.3e-134 481.9 700 41.1
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 5.9e-132 475.7 736 38.2
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.1e-125 454.9 739 39.4
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.4e-120 438.0 611 42.7
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 3.4e-119 433.3 671 38.7
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 2.1e-113 414.1 580 43.1
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 2.0e-111 407.5 540 44.1
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.9e-109 401.0 573 42.6
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 3.0e-107 393.7 480 46.5
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 6.6e-107 392.5 570 40.9
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 4.2e-101 373.2 437 48.5
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 7.1e-101 372.5 520 43.3
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.8e-96 357.8 378 51.1
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 4.0e-96 356.7 590 38.5
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 1.9e-90 337.8 331 51.7
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 1.2e-87 328.6 446 43.7
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.6e-87 327.4 325 52.0
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 7.6e-87 325.9 429 44.1
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 8.4e-86 322.4 354 50.6
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 5.5e-85 319.7 373 46.6
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 1.9e-82 311.2 689 31.9
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.3e-78 298.5 339 49.0
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.7e-76 290.8 277 54.2
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 6.3e-73 279.6 790 27.2
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.6e-71 274.2 365 43.0
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 1.0e-70 272.3 675 28.7
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.0e-67 262.3 251 54.2
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 4.3e-66 256.9 298 47.3
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 2.8e-65 254.2 861 25.0
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 7.7e-63 246.1 168 73.2
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 2.2e-62 244.6 263 49.8
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.1e-60 238.0 204 59.3
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 2.0e-58 231.5 474 33.8
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 1.1e-50 205.7 673 29.0
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 6.3e-49 199.9 260 46.9
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 1.2e-47 195.7 171 56.7
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 1.6e-47 195.3 168 61.9
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 5.9e-47 193.4 148 68.2
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 4.0e-43 180.6 670 27.0
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 8.5e-38 162.9 894 22.3
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 1.1e-32 146.0 276 38.0
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.6e-31 142.1 223 40.4
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 5.7e-26 123.6 98 63.3
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 7.0e-24 116.7 104 51.9
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 3.5e-15 87.8 83 54.2
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 1.8e-11 75.5 170 31.8
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.5e-10 72.4 584 18.5
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 2.6e-10 71.6 282 27.3
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 4.4e-10 70.9 80 46.2
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.2e-07 62.8 34 79.4
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 5.0e-06 57.4 61 50.8


User provided reference genes

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