Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 8.6e-249 863.2 446 100.0
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 9.7e-208 726.9 447 79.9
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.4e-203 713.0 417 81.8
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 3.2e-195 685.3 413 81.6
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.8e-193 679.5 451 75.4
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 8.8e-193 677.2 425 78.1
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 3.3e-192 675.2 425 78.1
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 4.1e-190 668.3 450 73.8
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.2e-189 666.8 427 77.0
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 2.0e-189 666.0 425 76.7
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 2.6e-189 665.6 435 76.8
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.0e-188 663.7 424 76.9
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 6.5e-188 661.0 427 77.0
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 8.5e-188 660.6 433 76.9
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 8.5e-188 660.6 427 77.3
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.1e-187 660.2 401 81.5
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 2.5e-187 659.1 448 73.2
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 2.5e-187 659.1 426 76.5
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 2.5e-187 659.1 431 76.3
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 4.2e-187 658.3 423 76.1
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 4.2e-187 658.3 423 76.1
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 5.5e-187 657.9 427 76.3
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.2e-187 657.5 427 76.1
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 1.6e-186 656.4 424 76.7
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 3.6e-186 655.2 429 74.8
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 4.7e-186 654.8 427 76.6
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 1.8e-185 652.9 438 74.0
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 3.0e-185 652.1 436 75.5
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 3.0e-185 652.1 434 74.9
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 5.2e-185 651.4 423 75.4
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 8.8e-185 650.6 437 73.7
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.1e-184 650.2 430 72.8
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.1e-184 650.2 438 73.1
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 2.0e-184 649.4 419 74.2
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.0e-184 649.4 432 72.9
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 2.0e-184 649.4 422 76.8
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 3.3e-184 648.7 428 76.2
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 4.4e-184 648.3 422 76.8
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 4.4e-184 648.3 434 74.7
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 7.4e-184 647.5 417 77.0
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 7.4e-184 647.5 427 74.7
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 7.4e-184 647.5 425 74.8
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 9.7e-184 647.1 421 76.0
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 9.7e-184 647.1 437 74.1
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 9.7e-184 647.1 462 71.6
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.3e-183 646.7 422 76.8
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 2.8e-183 645.6 436 73.6
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 3.7e-183 645.2 421 75.5
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 4.8e-183 644.8 417 76.5
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 6.3e-183 644.4 417 76.5
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 6.3e-183 644.4 437 71.9
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 8.2e-183 644.0 423 74.2
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 1.1e-182 643.7 430 74.7
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.4e-182 643.3 417 77.0
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 1.4e-182 643.3 436 73.4
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 2.4e-182 642.5 420 76.7
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 2.4e-182 642.5 431 75.4
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 5.3e-182 641.3 414 76.6
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.3e-182 641.3 434 74.2
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 7.0e-182 641.0 417 75.1
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.2e-181 640.2 417 76.5
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 1.2e-181 640.2 427 74.7
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.0e-181 639.4 431 74.5
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.6e-181 639.0 434 74.0
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 3.5e-181 638.6 431 74.5
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 4.5e-181 638.3 431 73.3
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 5.9e-181 637.9 421 75.1
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 7.7e-181 637.5 433 73.9
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 1.0e-180 637.1 420 76.2
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 1.3e-180 636.7 420 76.0
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 3.8e-180 635.2 417 75.8
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 3.8e-180 635.2 417 75.8
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 5.0e-180 634.8 416 75.2
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 5.0e-180 634.8 428 72.7
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 6.5e-180 634.4 421 76.0
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 6.5e-180 634.4 437 72.3
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.1e-179 633.6 426 74.2
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.1e-179 633.6 425 75.1
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.9e-179 632.9 439 71.8
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 3.2e-179 632.1 425 72.9
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 3.2e-179 632.1 437 72.3
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 4.2e-179 631.7 434 72.6
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 7.2e-179 630.9 422 73.5
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 1.2e-178 630.2 418 74.2
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 1.2e-178 630.2 434 71.9
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 1.6e-178 629.8 423 74.7
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 8.0e-178 627.5 425 73.9
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 1.4e-177 626.7 420 75.0
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 8.8e-177 624.0 437 70.7
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 3.3e-176 622.1 423 71.9
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 5.7e-176 621.3 419 73.7
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 5.7e-176 621.3 416 74.0
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 2.0e-173 612.8 431 70.5
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 2.2e-172 609.4 416 72.4
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.1e-171 607.1 437 68.9
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 3.2e-171 605.5 419 71.6
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.8e-169 599.7 422 70.4
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 1.8e-169 599.7 407 71.5
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 5.2e-169 598.2 421 69.6
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 1.7e-167 593.2 414 72.5
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 1.7e-167 593.2 419 67.5
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 6.3e-167 591.3 426 70.4
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.2e-163 577.8 412 68.9
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.4e-158 563.5 416 67.3
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 2.7e-157 559.3 415 65.3
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 2.9e-156 555.8 419 66.3
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 5.6e-155 551.6 374 73.3
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 2.8e-154 549.3 417 65.2
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 6.1e-154 548.1 424 65.3
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 7.5e-152 541.2 369 74.8
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 3.7e-151 538.9 380 71.1
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 8.3e-151 537.7 419 63.2
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 8.3e-151 537.7 417 64.5
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 3.5e-149 532.3 367 73.6
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 4.6e-149 531.9 428 65.2
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 4.6e-149 531.9 418 63.6
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 5.0e-148 528.5 417 62.1
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.2e-146 523.9 371 70.9
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 2.1e-146 523.1 421 63.4
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 4.7e-146 521.9 434 63.4
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 4.7e-146 521.9 413 63.2
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 1.8e-145 520.0 396 67.4
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 8.9e-145 517.7 417 62.6
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 1.7e-143 513.5 424 61.3
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 1.6e-141 506.9 422 61.6
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 3.3e-139 499.2 420 59.5
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 2.0e-136 490.0 433 60.3
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 9.2e-134 481.1 421 58.7
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 6.6e-132 474.9 419 58.0
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.1e-129 467.6 419 57.3
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.4e-129 466.5 365 64.1
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 5.8e-128 461.8 421 56.1
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 9.9e-128 461.1 347 69.2
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 3.8e-127 459.1 445 52.6
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 7.1e-126 454.9 442 52.7
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 7.1e-126 454.9 445 52.4
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 8.7e-124 448.0 307 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 2.5e-123 446.4 412 57.8
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 3.6e-122 442.6 337 67.4
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 7.6e-120 434.9 407 56.3
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.2e-119 433.3 429 57.3
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.4e-118 430.6 430 54.2
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.6e-112 409.8 415 52.0
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.6e-109 400.6 369 56.1
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 5.1e-108 395.6 271 71.2
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 8.7e-108 394.8 373 57.1
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.1e-105 387.9 410 51.0
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 6.4e-103 378.6 390 55.6
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 3.9e-100 369.4 225 75.6
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 1.3e-95 354.4 368 52.4
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 3.4e-88 329.7 374 52.7
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.7e-85 320.1 293 56.7
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 3.3e-83 313.2 174 83.9
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 1.7e-74 284.3 239 63.6
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 1.5e-70 271.2 249 59.8
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.5e-63 245.4 203 57.1
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.5e-63 245.4 203 57.1
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.7e-61 239.6 198 57.6
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.7e-61 239.6 198 57.6
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.7e-61 239.6 198 57.6
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.5e-55 218.8 200 58.5
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.5e-55 218.8 200 58.5
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.5e-55 218.8 200 58.5
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 2.7e-53 213.8 116 86.2
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 4.5e-48 196.4 113 78.8
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 1.6e-37 161.4 87 85.1
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.8e-36 157.9 87 82.8
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 1.2e-35 155.2 98 73.5
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.7e-34 151.4 117 64.1
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 1.1e-33 148.7 85 78.8
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 1.6e-32 144.8 162 51.9
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 7.3e-30 136.0 76 80.3
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 3.6e-29 133.7 111 60.4
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.4e-25 121.7 148 48.0
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 1.7e-23 114.8 109 54.1
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 5.1e-23 113.2 71 74.6
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.6e-23 112.8 133 53.4
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 3.6e-21 107.1 64 73.4
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 3.1e-20 104.0 54 85.2
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 5.2e-20 103.2 54 83.3
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 3.9e-15 87.0 98 51.0
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 8.1e-13 79.3 42 83.3
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 5.8e-11 73.2 39 79.5
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 7.6e-11 72.8 44 72.7
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 2.4e-09 67.8 148 37.8
FAN10G3644 Fragaria x ananassa HOM05D003673 ORTHO05D025527 2.1e-08 64.7 148 36.5
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 2.7e-08 64.3 148 37.2


User provided reference genes

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