Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 0.0e+00 1318.5 1180 100.0
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.5e-114 418.7 1346 38.6
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.7e-100 371.3 1338 42.4
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 1.1e-96 359.4 1330 39.4
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.2e-93 347.8 1310 41.6
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 6.1e-92 343.6 1327 44.8
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 6.3e-89 333.6 1337 43.1
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.4e-88 331.6 1336 40.8
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.3e-86 325.9 738 45.7
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 9.4e-85 319.7 735 36.5
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.2e-79 302.8 1345 42.1
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 1.8e-75 288.9 1397 32.2
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.5e-74 285.8 1328 38.9
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 2.0e-74 285.4 329 58.1
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 5.7e-74 283.9 1525 29.0
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 4.1e-72 277.7 1378 34.6
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-70 273.1 1374 31.4
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.3e-70 272.7 1329 38.3
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.7e-70 272.3 1374 31.4
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.9e-69 268.9 1305 37.8
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.2e-69 268.1 539 41.7
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 4.2e-69 267.7 1370 37.6
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.2e-68 266.2 1400 37.9
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 4.7e-68 264.2 1359 35.1
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 8.8e-67 260.0 451 42.6
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.0e-66 258.8 1386 35.1
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 9.8e-66 256.5 1532 34.5
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.4e-64 252.7 1331 42.9
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.6e-63 249.2 1410 35.5
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 1.1e-61 243.0 1358 32.9
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 2.5e-61 241.9 971 29.1
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.6e-60 239.2 1393 35.2
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 3.6e-60 238.0 1423 32.8
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.6e-60 238.0 1343 39.4
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.0e-58 232.3 1363 34.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 4.4e-58 231.1 777 31.1
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 4.4e-58 231.1 1433 34.7
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.7e-58 230.7 499 43.7
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 7.5e-58 230.3 499 43.5
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.1e-56 226.5 532 41.7
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 3.5e-55 221.5 1368 34.4
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 8.6e-54 216.9 499 41.7
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 5.2e-51 207.6 434 38.5
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.0e-50 205.7 517 38.9
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.6e-50 205.3 540 35.7
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.4e-50 204.9 1343 39.3
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.8e-50 204.1 536 34.7
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 1.7e-49 202.6 1416 36.8
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.9e-48 199.1 1415 36.1
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 9.2e-48 196.8 475 42.5
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.6e-47 196.1 536 34.5
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.6e-47 194.5 1381 30.6
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 4.6e-47 194.5 419 41.5
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.0e-46 193.4 536 34.1
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.3e-46 193.0 1124 29.6
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 3.3e-45 188.3 392 37.8
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 4.3e-45 188.0 1373 32.8
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.1e-43 183.3 799 40.3
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.4e-43 183.0 1557 25.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.1e-43 181.8 1393 34.1
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 4.4e-42 177.9 1317 31.8
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 9.8e-42 176.8 1297 32.9
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 2.4e-40 172.2 433 32.8
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 3.2e-40 171.8 542 32.1
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 7.8e-39 167.2 490 37.8
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.3e-38 166.4 1387 34.8
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 3.3e-37 161.8 451 31.9
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.8e-36 158.7 1466 28.4
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 6.2e-36 157.5 1437 36.0
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 8.1e-36 157.1 1402 34.0
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.1e-35 156.8 1391 31.3
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 4.0e-35 154.8 1344 29.8
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 6.8e-35 154.1 514 28.8
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 2.6e-34 152.1 1380 33.4
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 3.4e-34 151.8 1566 28.6
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 5.8e-34 151.0 1413 36.0
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 1.3e-33 149.8 1268 34.1
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.9e-33 148.7 464 31.5
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 4.1e-32 144.8 1586 28.3
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 7.1e-32 144.1 426 32.4
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.2e-31 143.3 234 45.7
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 2.7e-31 142.1 350 37.1
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 4.6e-31 141.4 480 29.0
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 3.3e-29 135.2 223 41.7
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 5.6e-29 134.4 419 32.9
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.3e-29 134.0 427 34.9
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.8e-28 132.1 293 33.4
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.8e-27 129.4 212 41.0
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.8e-27 129.4 227 41.0
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 2.6e-26 125.6 531 27.3
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 4.4e-26 124.8 493 26.6
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.9e-25 122.1 451 31.7
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.9e-25 122.1 451 31.7
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 2.9e-25 122.1 226 42.5
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 6.4e-25 120.9 416 30.3
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 6.4e-25 120.9 1398 33.3
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 6.4e-25 120.9 596 38.4
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 7.1e-24 117.5 348 32.2
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 7.1e-24 117.5 395 34.4
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 4.6e-23 114.8 348 31.9
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 6.0e-23 114.4 477 28.1
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.0e-22 113.6 233 38.2
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 1.3e-22 113.2 258 40.3
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.7e-22 112.8 226 43.8
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 2.3e-22 112.5 1593 26.6
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.0e-22 112.1 351 34.8
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 3.9e-22 111.7 466 31.1
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 6.6e-22 110.9 1397 33.2
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 8.7e-22 110.5 190 40.0
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.1e-21 110.2 539 38.8
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.5e-21 109.8 490 29.0
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.5e-21 109.0 301 35.9
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 4.3e-21 108.2 1214 33.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.6e-21 107.8 170 58.2
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.6e-20 106.3 296 33.8
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 3.6e-20 105.1 223 37.2
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.8e-20 104.8 1390 31.9
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.8e-19 102.8 178 39.9
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 4.0e-19 101.7 1416 29.3
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 5.3e-19 101.3 517 27.7
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 6.9e-19 100.9 469 31.6
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.2e-18 100.1 316 32.0
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.2e-18 100.1 264 37.1
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.2e-18 100.1 234 34.2
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.0e-18 99.4 339 30.7
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 2.0e-18 99.4 113 52.2
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 2.6e-18 99.0 315 34.9
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 7.6e-18 97.4 1194 30.7
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.9e-18 97.1 448 30.4
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.9e-18 97.1 448 30.4
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.3e-17 96.7 280 32.9
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 4.9e-17 94.7 410 29.8
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 6.4e-17 94.4 351 35.3
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.1e-16 93.6 214 37.9
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.4e-16 93.2 348 26.4
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.9e-16 92.8 175 36.0
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 7.1e-16 90.9 448 31.5
Oeu030768.1 Olea europaea HOM05D003806 ORTHO05D004346 1.2e-15 90.1 127 48.8
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.1e-15 89.4 448 29.7
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 2.1e-15 89.4 140 41.4
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 3.5e-15 88.6 393 44.8
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.5e-15 88.6 441 26.5
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 4.6e-15 88.2 244 30.3
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 6.0e-15 87.8 314 30.9
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.0e-14 87.0 368 25.3
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 5.1e-14 84.7 123 53.7
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 6.7e-14 84.3 403 26.3
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.1e-13 83.6 322 33.2
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.9e-13 82.8 280 31.1
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 3.3e-13 82.0 90 58.9
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 9.6e-13 80.5 1154 28.6
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 2.1e-12 79.3 298 29.5
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 2.1e-12 79.3 319 29.5
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 2.1e-12 79.3 319 29.5
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 2.1e-12 79.3 298 29.5
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 4.8e-12 78.2 156 35.3
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.1e-11 77.0 441 26.3
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 3.1e-11 75.5 60 70.0
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 5.3e-11 74.7 342 30.1
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 4.2e-08 65.1 314 29.0
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 2.1e-07 62.8 304 28.9
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.6e-07 61.6 171 34.5
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 1.3e-06 60.1 604 27.2
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 3.9e-06 58.5 82 41.5
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.7e-06 57.4 213 29.1


User provided reference genes

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