Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23920 Striga asiatica HOM05D000276 ORTHO05D006204 8.8e-48 193.4 102 100.0
SalBow6G5970 Salvia bowleyana HOM05D000276 ORTHO05D006204 7.2e-34 147.1 100 77.0
MSTRG.22517 Avicennia marina HOM05D000276 ORTHO05D006204 5.7e-31 137.5 100 76.0
Oeu059014.1 Olea europaea HOM05D000276 ORTHO05D006204 1.7e-30 136.0 100 75.0
Dinv37820 Davidia involucrata HOM05D000276 ORTHO05D006204 7.7e-28 127.1 100 71.0
MSTRG.10914 Avicennia marina HOM05D000276 ORTHO05D006204 1.3e-27 126.3 98 74.5
unitig_749.g14034 Utricularia gibba HOM05D000276 ORTHO05D006204 1.3e-27 126.3 100 68.0
CiPaw.01G211700 Carya illinoinensis HOM05D000276 ORTHO05D006204 1.7e-27 125.9 100 73.0
COL.COLO4_30861 Corchorus olitorius HOM05D000276 ORTHO05D006204 1.7e-27 125.9 100 71.0
Prupe.3G031200 Prunus persica HOM05D000276 ORTHO05D006204 1.7e-27 125.9 100 72.0
Ciclev10025517m.g Citrus clementina HOM05D000276 ORTHO05D006204 3.8e-27 124.8 100 71.0
CANSAT56G1386 Cannabis sativa HOM05D000276 ORTHO05D006204 5.0e-27 124.4 100 71.0
Dinv20385 Davidia involucrata HOM05D000276 ORTHO05D003951 8.6e-27 123.6 101 65.3
MD09G1173100 Malus domestica HOM05D000276 ORTHO05D006204 8.6e-27 123.6 100 72.0
QL05p001260 Quercus lobata HOM05D000276 ORTHO05D006204 1.9e-26 122.5 100 70.0
VMungo0331G0415 Vigna mungo HOM05D000276 ORTHO05D006204 1.9e-26 122.5 100 70.0
Thecc.06G129800 Theobroma cacao HOM05D000276 ORTHO05D006204 3.3e-26 121.7 100 70.0
MD17G1154200 Malus domestica HOM05D000276 ORTHO05D006204 4.2e-26 121.3 100 71.0
Phvul.010G123300 Phaseolus vulgaris HOM05D000276 ORTHO05D006204 5.5e-26 120.9 100 69.0
Atru.chr1.4141 Acer truncatum HOM05D000276 ORTHO05D006204 2.1e-25 119.0 102 66.7
CSS0009948 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D006204 2.8e-25 118.6 101 66.3
CAN.G790.61 Capsicum annuum HOM05D000276 ORTHO05D006204 2.8e-25 118.6 99 64.6
PGSC0003DMG400009148 Solanum tuberosum HOM05D000276 ORTHO05D006204 2.8e-25 118.6 99 63.6
Peaxi162Scf00038g02240 Petunia axillaris HOM05D000276 ORTHO05D006204 4.7e-25 117.9 99 64.6
Solyc03g123590.4 Solanum lycopersicum HOM05D000276 ORTHO05D006204 4.7e-25 117.9 99 63.6
RcHm_v2.0_Chr2g0147831 Rosa chinensis HOM05D000276 ORTHO05D006204 8.0e-25 117.1 100 69.0
Sp1g40350 Schrenkiella parvula HOM05D000276 ORTHO05D006204 1.0e-24 116.7 100 66.0
Sopen03g041360 Solanum pennellii HOM05D000276 ORTHO05D006204 1.0e-24 116.7 99 63.6
Potri.001G163000 Populus trichocarpa HOM05D000276 ORTHO05D006204 1.4e-24 116.3 100 65.0
arahy.Tifrunner.gnm1.ann1.XY28YB Arachis hypogaea HOM05D000276 ORTHO05D006204 2.3e-24 115.5 100 66.0
Cc04_g00750 Coffea canephora HOM05D000276 ORTHO05D006204 2.3e-24 115.5 100 64.0
Lj3g0018226 Lotus japonicus HOM05D000276 ORTHO05D006204 3.0e-24 115.2 100 66.0
Sabra01G0129700 Salix brachista HOM05D000276 ORTHO05D006204 3.0e-24 115.2 100 64.0
PSO135G0530 Papaver somniferum HOM05D000276 ORTHO05D006204 4.0e-24 114.8 100 62.0
AUR62025617 Chenopodium quinoa HOM05D000276 ORTHO05D006204 5.2e-24 114.4 100 64.0
PSO724G0674 Papaver somniferum HOM05D000276 ORTHO05D006204 5.2e-24 114.4 101 62.4
Thhalv10012249m.g Eutrema salsugineum HOM05D000276 ORTHO05D006204 6.8e-24 114.0 100 64.0
Cfa003463 Carpinus fangiana HOM05D000276 ORTHO05D006204 8.9e-24 113.6 100 66.0
CiPaw.02G131200 Carya illinoinensis HOM05D000276 ORTHO05D006204 1.2e-23 113.2 100 66.0
Manes.04G150700 Manihot esculenta HOM05D000276 ORTHO05D006204 1.2e-23 113.2 100 63.0
Aqoxy4G00012 Aquilegia oxysepala HOM05D000276 ORTHO05D006204 1.5e-23 112.8 100 67.0
Aqoxy7G04179 Aquilegia oxysepala HOM05D000276 ORTHO05D006204 1.5e-23 112.8 100 67.0
A06p00740 Brassica napus HOM05D000276 ORTHO05D003951 1.5e-23 112.8 100 63.0
C06p09620 Brassica napus HOM05D000276 ORTHO05D003951 1.5e-23 112.8 100 63.0
BolC6t36034H Brassica oleracea HOM05D000276 ORTHO05D003951 1.5e-23 112.8 100 63.0
Glyma.16G013800 Glycine max HOM05D000276 ORTHO05D006204 1.5e-23 112.8 100 67.0
Psat4g165480 Pisum sativum HOM05D000276 ORTHO05D006204 1.5e-23 112.8 100 65.0
Lalb_Chr17g0343241 Lupinus albus HOM05D000276 ORTHO05D006204 2.0e-23 112.5 100 65.0
AT1G53860 Arabidopsis thaliana HOM05D000276 ORTHO05D006204 2.6e-23 112.1 100 64.0
Haze_16133 Corylus avellana HOM05D000276 ORTHO05D006204 2.6e-23 112.1 119 58.8
TPR.G8719 Trifolium pratense HOM05D000276 ORTHO05D006204 2.6e-23 112.1 100 65.0
AL1G62570 Arabidopsis lyrata HOM05D000276 ORTHO05D006204 3.4e-23 111.7 100 64.0
BcaB02g10881 Brassica carinata HOM05D000276 ORTHO05D006204 3.4e-23 111.7 100 64.0
CARHR044190 Cardamine hirsuta HOM05D000276 ORTHO05D006204 3.4e-23 111.7 100 63.0
Lsat_1_v5_gn_1_39200 Lactuca sativa HOM05D000276 ORTHO05D006204 4.4e-23 111.3 101 65.3
Lj5A30G67 Lonicera japonica HOM05D000276 ORTHO05D006204 4.4e-23 111.3 100 63.0
Carub.0001s4314 Capsella rubella HOM05D000276 ORTHO05D006204 5.7e-23 110.9 100 63.0
Lalb_Chr18g0044871 Lupinus albus HOM05D000276 ORTHO05D006204 5.7e-23 110.9 100 67.0
Medtr8g023130 Medicago truncatula HOM05D000276 ORTHO05D006204 5.7e-23 110.9 100 64.0
THA.LOC104810585 Tarenaya hassleriana HOM05D000276 ORTHO05D006204 9.8e-23 110.2 100 60.0
TAR383G0418 Trochodendron aralioides HOM05D000276 ORTHO05D006204 9.8e-23 110.2 100 63.0
A05p17850 Brassica napus HOM05D000276 ORTHO05D006204 1.3e-22 109.8 99 62.6
BraA05t20675Z Brassica rapa HOM05D000276 ORTHO05D006204 1.3e-22 109.8 99 62.6
Os11g0616300 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D006204 2.2e-22 109.0 100 61.0
EL10Ac7g16493 Beta vulgaris HOM05D000276 ORTHO05D006204 2.8e-22 108.6 100 63.0
BcaB07g33286 Brassica carinata HOM05D000276 ORTHO05D006204 2.8e-22 108.6 100 61.0
vmacro22015 Vaccinium macrocarpon HOM05D000276 ORTHO05D006204 3.7e-22 108.2 100 64.0
BcaC08g43563 Brassica carinata HOM05D000276 ORTHO05D003951 6.3e-22 107.5 98 62.2
C06p15390 Brassica napus HOM05D000276 ORTHO05D003951 1.1e-21 106.7 98 62.2
BraA06t23308Z Brassica rapa HOM05D000276 ORTHO05D003951 1.4e-21 106.3 98 61.2
ClCG07G014300 Citrullus lanatus HOM05D000276 ORTHO05D006204 1.4e-21 106.3 99 64.6
Duzib235G0075 Durio zibethinus HOM05D000276 ORTHO05D006204 1.8e-21 105.9 100 63.0
PGR119G2259 Punica granatum HOM05D000276 ORTHO05D006204 1.8e-21 105.9 67 86.6
VMungo1309G2546 Vigna mungo HOM05D000276 ORTHO05D006204 1.8e-21 105.9 100 62.0
BcaC08g44139 Brassica carinata HOM05D000276 ORTHO05D003951 2.4e-21 105.5 98 61.2
AUR62001408 Chenopodium quinoa HOM05D000276 ORTHO05D006204 2.4e-21 105.5 100 60.0
Cpa.g.sc25.189 Carica papaya HOM05D000276 ORTHO05D006204 3.1e-21 105.1 98 64.3
Gorai.011G055400 Gossypium raimondii HOM05D000276 ORTHO05D006204 4.1e-21 104.8 100 62.0
MELO3C022698.2 Cucumis melo HOM05D000276 ORTHO05D006204 5.4e-21 104.4 98 61.2
Hund18639 Selenicereus undatus HOM05D000276 ORTHO05D006204 5.4e-21 104.4 79 70.9
FAN05G4018 Fragaria x ananassa HOM05D000276 ORTHO05D006204 9.2e-21 103.6 117 57.3
Manes.11G012900 Manihot esculenta HOM05D000276 ORTHO05D006204 1.2e-20 103.2 100 62.0
Gohir.A10G047611 Gossypium hirsutum HOM05D000276 ORTHO05D006204 1.6e-20 102.8 100 62.0
Gohir.D10G051900 Gossypium hirsutum HOM05D000276 ORTHO05D006204 5.9e-20 100.9 100 61.0
TAR624G0068 Trochodendron aralioides HOM05D000276 ORTHO05D006204 7.8e-20 100.5 95 66.3
HPP92_026318 Vanilla planifolia HOM05D000276 ORTHO05D006204 7.8e-20 100.5 98 62.2
Lsat_1_v5_gn_4_92260 Lactuca sativa HOM05D000276 ORTHO05D006204 2.3e-19 99.0 101 58.4
Actinidia24430 Actinidia chinensis HOM05D000276 ORTHO05D003951 5.0e-19 97.8 73 72.6
Rhsim12G0213200 Rhododendron simsii HOM05D000276 ORTHO05D003951 8.6e-19 97.1 72 75.0
Atru.chr1.4144 Acer truncatum HOM05D000276 ORTHO05D006204 1.1e-18 96.7 60 88.3
Sed0017728 Sechium edule HOM05D000276 ORTHO05D006204 1.5e-18 96.3 98 61.2
Phvul.009G261800 Phaseolus vulgaris HOM05D000276 ORTHO05D006204 3.3e-18 95.1 100 60.0
SEGI_36040 Sequoiadendron giganteum HOM05D000276 ORTHO05D006204 5.6e-18 94.4 71 67.6
Sed0020238 Sechium edule HOM05D000276 ORTHO05D006204 7.3e-18 94.0 98 58.2
SHI25222 Sapria himalayana HOM05D000276 ORTHO05D006204 9.5e-18 93.6 101 58.4
GSVIVG01016672001 Vitis vinifera HOM05D000276 ORTHO05D006204 1.2e-17 93.2 100 55.0
FvH4_6g35790 Fragaria vesca HOM05D000276 ORTHO05D006204 2.1e-17 92.4 100 57.0
FAN09G0859 Fragaria x ananassa HOM05D000276 ORTHO05D006204 2.1e-17 92.4 100 57.0
FAN14G2098 Fragaria x ananassa HOM05D000276 ORTHO05D006204 2.1e-17 92.4 100 57.0
FAN14G4808 Fragaria x ananassa HOM05D000276 ORTHO05D006204 2.1e-17 92.4 100 57.0
Lsat_1_v5_gn_5_137881 Lactuca sativa HOM05D000276 ORTHO05D006204 6.8e-16 87.4 66 75.8
Nitab4.5_0010687g0030 Nicotiana tabacum HOM05D000276 ORTHO05D006204 6.8e-16 87.4 100 54.0
MBI19_g32870_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D006204 8.9e-16 87.0 113 50.4
CDE06G0894 Ceratophyllum demersum HOM05D000276 ORTHO05D006204 2.0e-15 85.9 63 71.4
Lj9C538T3 Lonicera japonica HOM05D000276 ORTHO05D006204 5.8e-15 84.3 107 54.2
ECA234G3069 Erigeron canadensis HOM05D000276 ORTHO05D006204 7.5e-15 84.0 96 56.2
CDE07G0856 Ceratophyllum demersum HOM05D000276 ORTHO05D006204 9.8e-15 83.6 60 76.7
TWI23G0693 Tripterygium wilfordii HOM05D000276 ORTHO05D006204 1.7e-14 82.8 99 53.5
HanXRQChr10g0312011 Helianthus annuus HOM05D000276 ORTHO05D006204 2.2e-14 82.4 69 68.1
CDE03G0116 Ceratophyllum demersum HOM05D000276 ORTHO05D006204 8.3e-14 80.5 95 52.6
Migut.I01129 Erythranthe guttata HOM05D000276 ORTHO05D006204 3.2e-13 78.6 63 69.8
Rhsim08G0244500 Rhododendron simsii HOM05D000276 ORTHO05D006204 3.2e-13 78.6 90 54.4
MBI13_g01693_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D006204 1.2e-12 76.6 100 50.0
Nn6g35726 Nelumbo nucifera HOM05D000276 ORTHO05D006204 3.5e-12 75.1 100 49.0
Eucgr.I02162 Eucalyptus grandis HOM05D000276 ORTHO05D006204 1.7e-11 72.8 100 47.0
Duzib192G0480 Durio zibethinus HOM05D000276 ORTHO05D006204 5.0e-11 71.2 98 50.0
TAR626G1847 Trochodendron aralioides HOM05D000276 ORTHO05D006204 5.6e-10 67.8 40 90.0
vmacro15085 Vaccinium macrocarpon HOM05D000276 ORTHO05D006204 1.2e-09 66.6 100 46.0
vmacro18765 Vaccinium macrocarpon HOM05D000276 ORTHO05D006204 1.2e-09 66.6 100 46.0
CDE06G0723 Ceratophyllum demersum HOM05D000276 ORTHO05D006204 2.8e-09 65.5 60 63.3
ATR0099G058 Amborella trichopoda HOM05D000276 ORTHO05D006204 8.9e-08 60.5 100 39.0
Lalb_Chr04g0253931 Lupinus albus HOM05D000276 ORTHO05D006204 1.5e-07 59.7 71 52.1
Pp3c9_7900 Physcomitrium patens HOM05D000276 ORTHO05D006204 5.8e-07 57.8 76 48.7
SalBow6G0651 Salvia bowleyana HOM05D002191 ORTHO05D002292 1.3e-06 56.6 60 51.7
Hma1.2p1_0229F.1_g097050 Hydrangea macrophylla HOM05D000276 ORTHO05D006204 1.7e-06 56.2 100 40.0
vmacro21513 Vaccinium macrocarpon HOM05D002191 ORTHO05D002292 2.9e-06 55.5 70 44.3
Lalb_Chr24g0399281 Lupinus albus HOM05D002191 ORTHO05D002292 3.7e-06 55.1 71 45.1
Nitab4.5_0008337g0030 Nicotiana tabacum HOM05D000276 ORTHO05D006204 3.7e-06 55.1 99 37.4
Nitab4.5_0005942g0010 Nicotiana tabacum HOM05D002191 ORTHO05D002292 6.4e-06 54.3 71 43.7
Ca_13287_v3 Cicer arietinum L. HOM05D002191 ORTHO05D002292 8.3e-06 53.9 97 38.1


User provided reference genes

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