Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 1.1e-286 989.2 487 100.0
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 5.6e-108 395.6 349 60.5
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 6.2e-91 339.0 355 51.0
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 5.1e-85 319.3 307 55.7
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 5.6e-84 315.8 353 49.3
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 6.2e-83 312.4 354 50.6
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 2.6e-81 307.0 331 52.3
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 8.4e-80 302.0 352 48.3
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.6e-78 297.7 356 47.5
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 3.0e-77 293.5 364 47.5
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.1e-76 291.6 280 53.6
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 1.9e-76 290.8 257 56.0
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 4.3e-76 289.7 350 46.9
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 7.3e-76 288.9 343 46.4
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.6e-75 287.7 355 48.5
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 3.6e-75 286.6 357 44.8
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 6.2e-75 285.8 221 60.2
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 2.6e-73 280.4 377 44.6
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 4.5e-73 279.6 255 55.3
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 9.9e-73 278.5 242 57.4
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 3.8e-72 276.6 362 43.1
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 6.4e-72 275.8 374 42.5
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 6.4e-72 275.8 372 43.0
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 3.2e-71 273.5 248 54.8
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 7.1e-71 272.3 359 43.7
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 2.7e-70 270.4 367 43.6
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 3.5e-70 270.0 247 55.5
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 3.5e-70 270.0 370 42.7
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 4.6e-70 269.6 254 54.3
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 7.9e-70 268.9 245 55.9
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 1.3e-69 268.1 360 43.6
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 1.8e-69 267.7 365 43.3
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 1.8e-69 267.7 365 43.3
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 2.3e-69 267.3 362 43.9
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 2.3e-69 267.3 374 42.5
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 2.3e-69 267.3 254 53.9
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 3.9e-69 266.5 359 44.0
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 5.1e-69 266.2 370 43.0
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 5.1e-69 266.2 365 42.7
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 5.1e-69 266.2 337 46.3
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 6.7e-69 265.8 363 42.1
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 6.7e-69 265.8 254 52.8
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 8.7e-69 265.4 372 42.5
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 1.5e-68 264.6 254 52.0
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 1.5e-68 264.6 260 50.8
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 1.5e-68 264.6 368 43.5
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 2.5e-68 263.8 373 42.6
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.5e-68 263.8 267 49.4
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 3.3e-68 263.5 361 43.5
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 4.3e-68 263.1 260 50.8
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 9.6e-68 261.9 250 53.2
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 9.6e-68 261.9 250 53.2
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 9.6e-68 261.9 250 53.2
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 9.6e-68 261.9 270 48.9
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 9.6e-68 261.9 250 53.2
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.1e-67 260.8 250 53.2
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 2.8e-67 260.4 249 52.6
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 2.8e-67 260.4 245 51.4
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 3.7e-67 260.0 309 47.2
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 4.8e-67 259.6 244 52.9
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 6.2e-67 259.2 365 41.6
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 6.2e-67 259.2 360 40.8
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 6.2e-67 259.2 254 52.4
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 1.4e-66 258.1 247 51.8
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 1.4e-66 258.1 243 52.7
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 1.8e-66 257.7 331 45.3
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 5.3e-66 256.1 312 44.6
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 6.9e-66 255.8 247 52.2
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 6.9e-66 255.8 247 52.2
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 9.0e-66 255.4 245 52.7
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 9.0e-66 255.4 254 52.4
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 9.0e-66 255.4 245 50.2
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 1.2e-65 255.0 254 52.4
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 1.5e-65 254.6 247 51.8
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.5e-65 254.6 254 52.0
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 3.4e-65 253.4 299 45.5
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 5.8e-65 252.7 254 51.6
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 9.9e-65 251.9 364 42.3
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 3.8e-64 250.0 253 48.2
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 3.8e-64 250.0 270 47.4
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 3.8e-64 250.0 245 52.2
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 6.4e-64 249.2 281 46.6
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 2.4e-63 247.3 376 40.2
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 3.2e-63 246.9 271 49.4
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 9.3e-63 245.4 352 41.8
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 9.3e-63 245.4 305 43.3
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.2e-62 245.0 352 42.0
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 1.2e-62 245.0 366 41.3
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 1.6e-62 244.6 222 55.0
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 4.6e-62 243.0 253 48.2
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 1.0e-61 241.9 204 57.8
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 1.0e-61 241.9 320 41.6
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 1.3e-61 241.5 366 42.1
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 1.8e-61 241.1 364 40.1
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 2.3e-61 240.7 253 47.4
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 3.0e-61 240.4 282 43.6
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 5.1e-61 239.6 360 39.2
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 8.7e-61 238.8 274 44.5
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 4.3e-60 236.5 297 43.8
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 4.3e-60 236.5 213 54.0
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 2.8e-59 233.8 245 46.5
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 4.8e-59 233.0 250 46.4
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 4.8e-59 233.0 245 46.1
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 2.4e-58 230.7 365 39.7
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 1.6e-51 208.0 251 43.8
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 4.5e-49 199.9 195 52.3
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 4.5e-49 199.9 242 42.1
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 5.9e-49 199.5 233 44.6
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.2e-48 197.6 246 42.3
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 3.8e-48 196.8 268 42.5
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 4.2e-47 193.4 244 41.0
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 9.3e-47 192.2 151 60.9
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 3.6e-46 190.3 178 48.9
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 3.6e-46 190.3 191 48.7
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 1.0e-45 188.7 256 38.7
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 3.0e-45 187.2 187 48.1
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 3.9e-45 186.8 245 45.3
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 3.9e-45 186.8 249 39.4
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 5.1e-45 186.4 209 45.5
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 2.4e-42 177.6 156 55.1
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 2.4e-42 177.6 250 38.0
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 5.3e-42 176.4 234 40.2
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 1.2e-38 165.2 256 37.9
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 3.6e-38 163.7 183 45.4
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 3.0e-37 160.6 324 34.0
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 1.0e-32 145.6 172 45.9
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 2.5e-31 141.0 233 34.3
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 2.8e-27 127.5 119 56.3
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 1.5e-23 115.2 87 66.7
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 3.2e-23 114.0 160 38.1
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 4.2e-23 113.6 115 47.8
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 1.4e-21 108.6 112 43.8
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 5.7e-20 103.2 214 33.2
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 7.7e-17 92.8 60 71.7
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.0e-09 68.2 57 50.9


User provided reference genes

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