Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03380 Striga asiatica HOM05D001502 ORTHO05D403056 1.1e-72 276.6 142 100.0
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 2.8e-28 129.0 175 48.6
SGA_v2.0_scaffold42G16088 Striga asiatica HOM05D001502 ORTHO05D002950 4.7e-23 111.7 144 52.1
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 3.4e-21 105.5 179 41.9
SGA_v2.0_scaffold242G44254 Striga asiatica HOM05D001502 ORTHO05D002950 1.7e-17 93.2 100 57.0
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 3.6e-15 85.5 168 38.1
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 2.3e-14 82.8 176 37.5
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 4.4e-13 78.6 188 35.6
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 2.8e-12 75.9 188 31.9
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 3.7e-12 75.5 185 32.4
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 8.3e-12 74.3 175 35.4
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 8.3e-12 74.3 175 35.4
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 8.3e-12 74.3 175 35.4
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 3.1e-11 72.4 190 33.2
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 3.1e-11 72.4 196 31.6
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 3.1e-11 72.4 187 32.6
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 4.1e-11 72.0 196 32.1
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 4.1e-11 72.0 197 32.5
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 7.0e-11 71.2 186 33.9
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 9.2e-11 70.9 188 30.3
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 2.7e-10 69.3 187 31.6
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 4.5e-10 68.6 180 31.1
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 7.8e-10 67.8 188 29.3
Nitab4.5_0023620g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.3e-09 67.0 159 34.6
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 1.3e-09 67.0 186 32.3
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 1.7e-09 66.6 180 33.3
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 1.7e-09 66.6 188 31.4
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 1.7e-09 66.6 166 32.5
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 2.3e-09 66.2 186 31.7
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 2.3e-09 66.2 183 30.6
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 2.9e-09 65.9 186 31.2
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 2.9e-09 65.9 186 30.1
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 2.9e-09 65.9 181 30.9
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 3.8e-09 65.5 185 31.4
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 3.8e-09 65.5 185 31.4
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 5.0e-09 65.1 178 29.8
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 5.0e-09 65.1 190 30.5
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 5.0e-09 65.1 188 30.9
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 5.0e-09 65.1 172 32.0
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 5.0e-09 65.1 190 32.1
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 5.0e-09 65.1 188 32.4
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 6.6e-09 64.7 160 31.2
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 8.6e-09 64.3 188 30.9
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 8.6e-09 64.3 187 31.6
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 8.6e-09 64.3 186 31.7
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 8.6e-09 64.3 186 31.7
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 8.6e-09 64.3 188 29.8
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 1.1e-08 63.9 186 31.2
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 1.9e-08 63.2 188 30.3
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 1.9e-08 63.2 164 31.1
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.9e-08 63.2 174 32.2
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 1.9e-08 63.2 185 30.8
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 1.9e-08 63.2 189 30.2
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 2.5e-08 62.8 164 32.3
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 2.5e-08 62.8 186 31.7
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 3.3e-08 62.4 179 30.7
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 3.3e-08 62.4 181 30.9
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 3.3e-08 62.4 188 29.8
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 7.3e-08 61.2 188 30.3
Potri.001G104300 Populus trichocarpa HOM05D001502 ORTHO05D002950 7.3e-08 61.2 160 30.0
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 7.3e-08 61.2 193 28.0
unitig_0.g2859 Utricularia gibba HOM05D001502 ORTHO05D002950 9.5e-08 60.8 177 31.1
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 1.2e-07 60.5 180 30.6
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 1.2e-07 60.5 165 32.1
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 1.2e-07 60.5 193 28.0
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.1e-07 59.7 189 28.0
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 2.1e-07 59.7 145 34.5
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 2.1e-07 59.7 173 32.4
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 2.8e-07 59.3 190 30.0
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 3.6e-07 58.9 187 30.5
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 3.6e-07 58.9 188 26.1
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 3.6e-07 58.9 188 29.3
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 4.7e-07 58.5 185 30.3
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 6.1e-07 58.2 180 30.6
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 6.1e-07 58.2 186 30.1
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 8.0e-07 57.8 177 29.9
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 8.0e-07 57.8 188 29.3
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 1.0e-06 57.4 180 30.0
CAN.G774.29 Capsicum annuum HOM05D001502 ORTHO05D002950 1.0e-06 57.4 67 49.3
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 1.0e-06 57.4 189 27.0
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 1.8e-06 56.6 183 30.1
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 2.3e-06 56.2 184 26.6
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 2.3e-06 56.2 181 31.5
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 3.0e-06 55.8 182 26.9
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 3.0e-06 55.8 189 29.1
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 3.0e-06 55.8 74 45.9
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 4.0e-06 55.5 199 30.7
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 5.2e-06 55.1 185 28.6
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 6.8e-06 54.7 189 29.1
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 6.8e-06 54.7 189 29.1
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 6.8e-06 54.7 189 29.1
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 6.8e-06 54.7 165 32.7
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 8.9e-06 54.3 188 26.1
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 8.9e-06 54.3 188 27.7
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 8.9e-06 54.3 122 34.4
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 8.9e-06 54.3 184 26.6


User provided reference genes

Program Settings